Strain Fitness in Marinobacter adhaerens HP15 around HP15_3876

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3875 and HP15_3876 overlap by 4 nucleotidesHP15_3876 and HP15_3877 are separated by 87 nucleotides HP15_3875: HP15_3875 - acyltransferase, WS/DGAT/MGAT, at 4,101,411 to 4,102,778 _3875 HP15_3876: HP15_3876 - hypothetical protein, at 4,102,775 to 4,102,915 _3876 HP15_3877: HP15_3877 - secretion protein HlyD, at 4,103,003 to 4,104,043 _3877 Position (kb) 4102 4103Strain fitness (log2 ratio) -2 -1 0 1 2at 4101.800 kb on - strand, within HP15_3875at 4101.828 kb on + strand, within HP15_3875at 4101.853 kb on - strand, within HP15_3875at 4101.878 kb on - strand, within HP15_3875at 4101.954 kb on + strand, within HP15_3875at 4102.003 kb on - strand, within HP15_3875at 4102.037 kb on + strand, within HP15_3875at 4102.037 kb on + strand, within HP15_3875at 4102.039 kb on + strand, within HP15_3875at 4102.047 kb on - strand, within HP15_3875at 4102.049 kb on + strand, within HP15_3875at 4102.193 kb on - strand, within HP15_3875at 4102.282 kb on + strand, within HP15_3875at 4102.282 kb on + strand, within HP15_3875at 4102.348 kb on + strand, within HP15_3875at 4102.414 kb on - strand, within HP15_3875at 4102.483 kb on + strand, within HP15_3875at 4102.605 kb on + strand, within HP15_3875at 4102.605 kb on + strand, within HP15_3875at 4102.642 kb on - strandat 4102.642 kb on - strandat 4102.642 kb on - strandat 4102.697 kb on + strandat 4102.697 kb on + strandat 4102.697 kb on + strandat 4102.705 kb on - strandat 4102.741 kb on - strandat 4102.757 kb on + strandat 4102.809 kb on + strand, within HP15_3876at 4102.948 kb on + strandat 4102.963 kb on + strandat 4102.995 kb on + strandat 4103.005 kb on - strandat 4103.005 kb on - strandat 4103.005 kb on - strandat 4103.039 kb on + strandat 4103.084 kb on - strandat 4103.158 kb on - strand, within HP15_3877at 4103.210 kb on + strand, within HP15_3877at 4103.265 kb on + strand, within HP15_3877at 4103.305 kb on - strand, within HP15_3877at 4103.380 kb on - strand, within HP15_3877at 4103.405 kb on + strand, within HP15_3877at 4103.405 kb on + strand, within HP15_3877at 4103.413 kb on - strand, within HP15_3877at 4103.416 kb on + strand, within HP15_3877at 4103.424 kb on - strand, within HP15_3877at 4103.588 kb on + strand, within HP15_3877at 4103.588 kb on + strand, within HP15_3877at 4103.620 kb on - strand, within HP15_3877at 4103.648 kb on + strand, within HP15_3877at 4103.656 kb on - strand, within HP15_3877at 4103.698 kb on + strand, within HP15_3877at 4103.706 kb on - strand, within HP15_3877at 4103.706 kb on - strand, within HP15_3877at 4103.708 kb on + strand, within HP15_3877at 4103.736 kb on + strand, within HP15_3877at 4103.744 kb on - strand, within HP15_3877at 4103.744 kb on - strand, within HP15_3877

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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4,101,800 - HP15_3875 0.28 -0.4
4,101,828 + HP15_3875 0.30 -1.4
4,101,853 - HP15_3875 0.32 -1.1
4,101,878 - HP15_3875 0.34 -0.2
4,101,954 + HP15_3875 0.40 -1.8
4,102,003 - HP15_3875 0.43 -1.1
4,102,037 + HP15_3875 0.46 -0.4
4,102,037 + HP15_3875 0.46 +0.3
4,102,039 + HP15_3875 0.46 -1.5
4,102,047 - HP15_3875 0.46 -0.4
4,102,049 + HP15_3875 0.47 -1.1
4,102,193 - HP15_3875 0.57 -0.2
4,102,282 + HP15_3875 0.64 +1.5
4,102,282 + HP15_3875 0.64 +0.1
4,102,348 + HP15_3875 0.68 -1.3
4,102,414 - HP15_3875 0.73 -0.8
4,102,483 + HP15_3875 0.78 -0.7
4,102,605 + HP15_3875 0.87 -1.0
4,102,605 + HP15_3875 0.87 +1.8
4,102,642 - -0.7
4,102,642 - -0.9
4,102,642 - -2.5
4,102,697 + -1.1
4,102,697 + -0.8
4,102,697 + +0.2
4,102,705 - +0.3
4,102,741 - -0.1
4,102,757 + -0.3
4,102,809 + HP15_3876 0.24 -0.6
4,102,948 + -0.3
4,102,963 + +1.3
4,102,995 + +1.0
4,103,005 - -0.4
4,103,005 - -0.3
4,103,005 - +1.1
4,103,039 + +0.0
4,103,084 - +0.8
4,103,158 - HP15_3877 0.15 +0.8
4,103,210 + HP15_3877 0.20 +1.1
4,103,265 + HP15_3877 0.25 -1.2
4,103,305 - HP15_3877 0.29 -0.7
4,103,380 - HP15_3877 0.36 +0.2
4,103,405 + HP15_3877 0.39 +1.0
4,103,405 + HP15_3877 0.39 +2.1
4,103,413 - HP15_3877 0.39 -0.5
4,103,416 + HP15_3877 0.40 -1.0
4,103,424 - HP15_3877 0.40 -1.6
4,103,588 + HP15_3877 0.56 +1.4
4,103,588 + HP15_3877 0.56 -0.1
4,103,620 - HP15_3877 0.59 -1.2
4,103,648 + HP15_3877 0.62 +0.0
4,103,656 - HP15_3877 0.63 -0.8
4,103,698 + HP15_3877 0.67 -1.4
4,103,706 - HP15_3877 0.68 +0.8
4,103,706 - HP15_3877 0.68 -0.1
4,103,708 + HP15_3877 0.68 -1.0
4,103,736 + HP15_3877 0.70 -0.0
4,103,744 - HP15_3877 0.71 -0.1
4,103,744 - HP15_3877 0.71 +0.5

Or see this region's nucleotide sequence