Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3873 and HP15_3874 are separated by 367 nucleotides HP15_3874 and HP15_3875 are separated by 9 nucleotides HP15_3875 and HP15_3876 overlap by 4 nucleotides HP15_3876 and HP15_3877 are separated by 87 nucleotides
HP15_3873: HP15_3873 - transcriptional regulator, AraC family protein, at 4,099,520 to 4,100,626
_3873
HP15_3874: HP15_3874 - membrane protein containing TM2 domains, at 4,100,994 to 4,101,401
_3874
HP15_3875: HP15_3875 - acyltransferase, WS/DGAT/MGAT, at 4,101,411 to 4,102,778
_3875
HP15_3876: HP15_3876 - hypothetical protein, at 4,102,775 to 4,102,915
_3876
HP15_3877: HP15_3877 - secretion protein HlyD, at 4,103,003 to 4,104,043
_3877
Position (kb)
4101
4102
4103 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4100.486 kb on - strand, within HP15_3873 at 4100.500 kb on - strand, within HP15_3873 at 4100.750 kb on + strand at 4100.758 kb on - strand at 4100.765 kb on - strand at 4100.765 kb on - strand at 4100.925 kb on + strand at 4100.925 kb on + strand at 4101.183 kb on + strand, within HP15_3874 at 4101.183 kb on + strand, within HP15_3874 at 4101.201 kb on + strand, within HP15_3874 at 4101.241 kb on + strand, within HP15_3874 at 4101.249 kb on - strand, within HP15_3874 at 4101.259 kb on - strand, within HP15_3874 at 4101.269 kb on + strand, within HP15_3874 at 4101.277 kb on - strand, within HP15_3874 at 4101.449 kb on + strand at 4101.457 kb on - strand at 4101.483 kb on - strand at 4101.541 kb on + strand at 4101.542 kb on - strand at 4101.714 kb on + strand, within HP15_3875 at 4101.721 kb on - strand, within HP15_3875 at 4101.758 kb on - strand, within HP15_3875 at 4101.800 kb on - strand, within HP15_3875 at 4101.828 kb on + strand, within HP15_3875 at 4101.853 kb on - strand, within HP15_3875 at 4101.878 kb on - strand, within HP15_3875 at 4101.954 kb on + strand, within HP15_3875 at 4102.003 kb on - strand, within HP15_3875 at 4102.037 kb on + strand, within HP15_3875 at 4102.037 kb on + strand, within HP15_3875 at 4102.039 kb on + strand, within HP15_3875 at 4102.047 kb on - strand, within HP15_3875 at 4102.049 kb on + strand, within HP15_3875 at 4102.193 kb on - strand, within HP15_3875 at 4102.282 kb on + strand, within HP15_3875 at 4102.282 kb on + strand, within HP15_3875 at 4102.348 kb on + strand, within HP15_3875 at 4102.414 kb on - strand, within HP15_3875 at 4102.483 kb on + strand, within HP15_3875 at 4102.605 kb on + strand, within HP15_3875 at 4102.605 kb on + strand, within HP15_3875 at 4102.642 kb on - strand at 4102.642 kb on - strand at 4102.642 kb on - strand at 4102.697 kb on + strand at 4102.697 kb on + strand at 4102.697 kb on + strand at 4102.705 kb on - strand at 4102.741 kb on - strand at 4102.757 kb on + strand at 4102.809 kb on + strand, within HP15_3876 at 4102.948 kb on + strand at 4102.963 kb on + strand at 4102.995 kb on + strand at 4103.005 kb on - strand at 4103.005 kb on - strand at 4103.005 kb on - strand at 4103.039 kb on + strand at 4103.084 kb on - strand at 4103.158 kb on - strand, within HP15_3877 at 4103.210 kb on + strand, within HP15_3877 at 4103.265 kb on + strand, within HP15_3877 at 4103.305 kb on - strand, within HP15_3877 at 4103.380 kb on - strand, within HP15_3877 at 4103.405 kb on + strand, within HP15_3877 at 4103.405 kb on + strand, within HP15_3877 at 4103.413 kb on - strand, within HP15_3877 at 4103.416 kb on + strand, within HP15_3877 at 4103.424 kb on - strand, within HP15_3877 at 4103.588 kb on + strand, within HP15_3877 at 4103.588 kb on + strand, within HP15_3877 at 4103.620 kb on - strand, within HP15_3877 at 4103.648 kb on + strand, within HP15_3877 at 4103.656 kb on - strand, within HP15_3877 at 4103.698 kb on + strand, within HP15_3877 at 4103.706 kb on - strand, within HP15_3877 at 4103.706 kb on - strand, within HP15_3877 at 4103.708 kb on + strand, within HP15_3877 at 4103.736 kb on + strand, within HP15_3877 at 4103.744 kb on - strand, within HP15_3877 at 4103.744 kb on - strand, within HP15_3877
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 4,100,486 - HP15_3873 0.87 -0.1 4,100,500 - HP15_3873 0.89 -0.7 4,100,750 + +1.8 4,100,758 - -0.9 4,100,765 - -0.6 4,100,765 - -0.0 4,100,925 + -1.1 4,100,925 + -1.1 4,101,183 + HP15_3874 0.46 -0.5 4,101,183 + HP15_3874 0.46 +1.4 4,101,201 + HP15_3874 0.51 -0.6 4,101,241 + HP15_3874 0.61 +1.3 4,101,249 - HP15_3874 0.62 +1.3 4,101,259 - HP15_3874 0.65 -0.2 4,101,269 + HP15_3874 0.67 -1.2 4,101,277 - HP15_3874 0.69 +1.2 4,101,449 + -1.2 4,101,457 - +1.3 4,101,483 - -0.7 4,101,541 + -0.4 4,101,542 - -0.7 4,101,714 + HP15_3875 0.22 -1.0 4,101,721 - HP15_3875 0.23 -2.7 4,101,758 - HP15_3875 0.25 +0.6 4,101,800 - HP15_3875 0.28 -0.4 4,101,828 + HP15_3875 0.30 -1.4 4,101,853 - HP15_3875 0.32 -1.1 4,101,878 - HP15_3875 0.34 -0.2 4,101,954 + HP15_3875 0.40 -1.8 4,102,003 - HP15_3875 0.43 -1.1 4,102,037 + HP15_3875 0.46 -0.4 4,102,037 + HP15_3875 0.46 +0.3 4,102,039 + HP15_3875 0.46 -1.5 4,102,047 - HP15_3875 0.46 -0.4 4,102,049 + HP15_3875 0.47 -1.1 4,102,193 - HP15_3875 0.57 -0.2 4,102,282 + HP15_3875 0.64 +1.5 4,102,282 + HP15_3875 0.64 +0.1 4,102,348 + HP15_3875 0.68 -1.3 4,102,414 - HP15_3875 0.73 -0.8 4,102,483 + HP15_3875 0.78 -0.7 4,102,605 + HP15_3875 0.87 -1.0 4,102,605 + HP15_3875 0.87 +1.8 4,102,642 - -0.7 4,102,642 - -0.9 4,102,642 - -2.5 4,102,697 + -1.1 4,102,697 + -0.8 4,102,697 + +0.2 4,102,705 - +0.3 4,102,741 - -0.1 4,102,757 + -0.3 4,102,809 + HP15_3876 0.24 -0.6 4,102,948 + -0.3 4,102,963 + +1.3 4,102,995 + +1.0 4,103,005 - -0.4 4,103,005 - -0.3 4,103,005 - +1.1 4,103,039 + +0.0 4,103,084 - +0.8 4,103,158 - HP15_3877 0.15 +0.8 4,103,210 + HP15_3877 0.20 +1.1 4,103,265 + HP15_3877 0.25 -1.2 4,103,305 - HP15_3877 0.29 -0.7 4,103,380 - HP15_3877 0.36 +0.2 4,103,405 + HP15_3877 0.39 +1.0 4,103,405 + HP15_3877 0.39 +2.1 4,103,413 - HP15_3877 0.39 -0.5 4,103,416 + HP15_3877 0.40 -1.0 4,103,424 - HP15_3877 0.40 -1.6 4,103,588 + HP15_3877 0.56 +1.4 4,103,588 + HP15_3877 0.56 -0.1 4,103,620 - HP15_3877 0.59 -1.2 4,103,648 + HP15_3877 0.62 +0.0 4,103,656 - HP15_3877 0.63 -0.8 4,103,698 + HP15_3877 0.67 -1.4 4,103,706 - HP15_3877 0.68 +0.8 4,103,706 - HP15_3877 0.68 -0.1 4,103,708 + HP15_3877 0.68 -1.0 4,103,736 + HP15_3877 0.70 -0.0 4,103,744 - HP15_3877 0.71 -0.1 4,103,744 - HP15_3877 0.71 +0.5
Or see this region's nucleotide sequence