Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3602 and HP15_3603 are separated by 89 nucleotides HP15_3603 and HP15_3604 are separated by 161 nucleotides HP15_3604 and HP15_3605 are separated by 137 nucleotides
HP15_3602: HP15_3602 - NADH-dependent flavin oxidoreductase, Oye family protein, at 3,797,436 to 3,798,548
_3602
HP15_3603: HP15_3603 - transcriptional regulator, HxlR family, at 3,798,638 to 3,799,108
_3603
HP15_3604: HP15_3604 - outer membrane protein OmpW, at 3,799,270 to 3,799,998
_3604
HP15_3605: HP15_3605 - conserved hypothetical protein, at 3,800,136 to 3,801,955
_3605
Position (kb)
3799
3800 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3798.494 kb on + strand at 3798.494 kb on - strand at 3798.562 kb on - strand at 3798.770 kb on + strand, within HP15_3603 at 3798.825 kb on + strand, within HP15_3603 at 3798.835 kb on + strand, within HP15_3603 at 3798.840 kb on + strand, within HP15_3603 at 3798.842 kb on + strand, within HP15_3603 at 3798.843 kb on - strand, within HP15_3603 at 3798.951 kb on - strand, within HP15_3603 at 3799.034 kb on + strand, within HP15_3603 at 3799.035 kb on + strand, within HP15_3603 at 3799.039 kb on + strand, within HP15_3603 at 3799.045 kb on + strand, within HP15_3603 at 3799.171 kb on + strand at 3799.179 kb on - strand at 3799.267 kb on - strand at 3799.268 kb on - strand at 3799.336 kb on + strand at 3799.336 kb on + strand at 3799.342 kb on - strand at 3799.493 kb on + strand, within HP15_3604 at 3799.493 kb on + strand, within HP15_3604 at 3799.501 kb on - strand, within HP15_3604 at 3799.532 kb on + strand, within HP15_3604 at 3799.573 kb on + strand, within HP15_3604 at 3799.573 kb on + strand, within HP15_3604 at 3799.573 kb on + strand, within HP15_3604 at 3799.578 kb on + strand, within HP15_3604 at 3799.581 kb on - strand, within HP15_3604 at 3799.581 kb on - strand, within HP15_3604 at 3799.581 kb on - strand, within HP15_3604 at 3799.581 kb on - strand, within HP15_3604 at 3799.620 kb on + strand, within HP15_3604 at 3799.630 kb on + strand, within HP15_3604 at 3799.638 kb on - strand, within HP15_3604 at 3799.692 kb on - strand, within HP15_3604 at 3799.737 kb on + strand, within HP15_3604 at 3799.769 kb on - strand, within HP15_3604 at 3799.807 kb on - strand, within HP15_3604 at 3799.887 kb on - strand, within HP15_3604 at 3799.966 kb on - strand at 3800.109 kb on + strand at 3800.109 kb on + strand at 3800.117 kb on - strand at 3800.161 kb on + strand at 3800.169 kb on - strand at 3800.208 kb on - strand at 3800.208 kb on - strand at 3800.255 kb on + strand at 3800.296 kb on + strand at 3800.505 kb on + strand, within HP15_3605 at 3800.505 kb on + strand, within HP15_3605 at 3800.513 kb on - strand, within HP15_3605 at 3800.513 kb on - strand, within HP15_3605 at 3800.513 kb on - strand, within HP15_3605 at 3800.513 kb on - strand, within HP15_3605 at 3800.603 kb on - strand, within HP15_3605 at 3800.614 kb on - strand, within HP15_3605 at 3800.616 kb on + strand, within HP15_3605 at 3800.623 kb on + strand, within HP15_3605 at 3800.626 kb on - strand, within HP15_3605 at 3800.650 kb on + strand, within HP15_3605 at 3800.658 kb on - strand, within HP15_3605 at 3800.658 kb on - strand, within HP15_3605 at 3800.676 kb on + strand, within HP15_3605 at 3800.754 kb on + strand, within HP15_3605 at 3800.783 kb on + strand, within HP15_3605 at 3800.791 kb on - strand, within HP15_3605 at 3800.791 kb on - strand, within HP15_3605 at 3800.791 kb on - strand, within HP15_3605 at 3800.864 kb on + strand, within HP15_3605 at 3800.872 kb on - strand, within HP15_3605 at 3800.936 kb on + strand, within HP15_3605 at 3800.938 kb on - strand, within HP15_3605 at 3800.938 kb on - strand, within HP15_3605 at 3800.972 kb on + strand, within HP15_3605 at 3800.972 kb on + strand, within HP15_3605 at 3800.980 kb on + strand, within HP15_3605 at 3800.980 kb on + strand, within HP15_3605 at 3800.988 kb on - strand, within HP15_3605
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 3,798,494 + -0.4 3,798,494 - +0.3 3,798,562 - +0.2 3,798,770 + HP15_3603 0.28 +0.0 3,798,825 + HP15_3603 0.40 +2.3 3,798,835 + HP15_3603 0.42 +0.6 3,798,840 + HP15_3603 0.43 +1.8 3,798,842 + HP15_3603 0.43 +0.2 3,798,843 - HP15_3603 0.44 +1.7 3,798,951 - HP15_3603 0.66 -0.2 3,799,034 + HP15_3603 0.84 +0.0 3,799,035 + HP15_3603 0.84 +0.8 3,799,039 + HP15_3603 0.85 +0.7 3,799,045 + HP15_3603 0.86 -0.2 3,799,171 + -0.6 3,799,179 - +0.9 3,799,267 - +0.3 3,799,268 - +0.8 3,799,336 + -0.4 3,799,336 + +1.5 3,799,342 - +0.0 3,799,493 + HP15_3604 0.31 +1.4 3,799,493 + HP15_3604 0.31 +1.0 3,799,501 - HP15_3604 0.32 -0.4 3,799,532 + HP15_3604 0.36 -1.2 3,799,573 + HP15_3604 0.42 +1.1 3,799,573 + HP15_3604 0.42 -0.0 3,799,573 + HP15_3604 0.42 +1.1 3,799,578 + HP15_3604 0.42 +1.3 3,799,581 - HP15_3604 0.43 +0.7 3,799,581 - HP15_3604 0.43 -0.0 3,799,581 - HP15_3604 0.43 +1.7 3,799,581 - HP15_3604 0.43 -0.4 3,799,620 + HP15_3604 0.48 +1.7 3,799,630 + HP15_3604 0.49 -1.2 3,799,638 - HP15_3604 0.50 -1.0 3,799,692 - HP15_3604 0.58 -1.3 3,799,737 + HP15_3604 0.64 +1.9 3,799,769 - HP15_3604 0.68 +1.0 3,799,807 - HP15_3604 0.74 -0.5 3,799,887 - HP15_3604 0.85 +1.1 3,799,966 - +0.5 3,800,109 + -0.4 3,800,109 + -1.1 3,800,117 - -1.0 3,800,161 + -2.5 3,800,169 - +0.4 3,800,208 - -0.4 3,800,208 - -0.7 3,800,255 + -1.1 3,800,296 + +1.3 3,800,505 + HP15_3605 0.20 -0.9 3,800,505 + HP15_3605 0.20 +0.5 3,800,513 - HP15_3605 0.21 -0.3 3,800,513 - HP15_3605 0.21 +1.3 3,800,513 - HP15_3605 0.21 +1.8 3,800,513 - HP15_3605 0.21 +1.9 3,800,603 - HP15_3605 0.26 +1.1 3,800,614 - HP15_3605 0.26 +1.3 3,800,616 + HP15_3605 0.26 +0.9 3,800,623 + HP15_3605 0.27 +2.2 3,800,626 - HP15_3605 0.27 +0.0 3,800,650 + HP15_3605 0.28 -0.8 3,800,658 - HP15_3605 0.29 -0.7 3,800,658 - HP15_3605 0.29 +1.2 3,800,676 + HP15_3605 0.30 -0.1 3,800,754 + HP15_3605 0.34 +0.4 3,800,783 + HP15_3605 0.36 -0.4 3,800,791 - HP15_3605 0.36 -0.4 3,800,791 - HP15_3605 0.36 +1.2 3,800,791 - HP15_3605 0.36 +0.8 3,800,864 + HP15_3605 0.40 -0.4 3,800,872 - HP15_3605 0.40 +2.1 3,800,936 + HP15_3605 0.44 +0.7 3,800,938 - HP15_3605 0.44 +1.2 3,800,938 - HP15_3605 0.44 +0.4 3,800,972 + HP15_3605 0.46 +1.5 3,800,972 + HP15_3605 0.46 +2.4 3,800,980 + HP15_3605 0.46 -0.6 3,800,980 + HP15_3605 0.46 -0.8 3,800,988 - HP15_3605 0.47 -0.2
Or see this region's nucleotide sequence