Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3416 and HP15_3417 overlap by 2 nucleotides HP15_3417 and HP15_3418 are separated by 125 nucleotides HP15_3418 and HP15_3419 are separated by 17 nucleotides HP15_3419 and HP15_3420 are separated by 128 nucleotides
HP15_3416: HP15_3416 - conserved hypothetical protein, at 3,591,027 to 3,592,301
_3416
HP15_3417: HP15_3417 - RNA methyltransferase, TrmH family, group 1, at 3,592,300 to 3,593,028
_3417
HP15_3418: HP15_3418 - D-amino acid dehydrogenase small subunit, at 3,593,154 to 3,594,425
_3418
HP15_3419: HP15_3419 - polyphosphate kinase 2, predicted, at 3,594,443 to 3,595,276
_3419
HP15_3420: HP15_3420 - hydrolase, TatD family, at 3,595,405 to 3,596,214
_3420
Position (kb)
3593
3594
3595 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3592.165 kb on - strand, within HP15_3416 at 3592.258 kb on - strand at 3592.272 kb on + strand at 3592.311 kb on - strand at 3592.358 kb on + strand at 3592.358 kb on + strand at 3592.387 kb on + strand, within HP15_3417 at 3592.411 kb on + strand, within HP15_3417 at 3592.441 kb on + strand, within HP15_3417 at 3592.467 kb on - strand, within HP15_3417 at 3592.516 kb on - strand, within HP15_3417 at 3592.571 kb on + strand, within HP15_3417 at 3592.571 kb on + strand, within HP15_3417 at 3592.571 kb on + strand, within HP15_3417 at 3592.579 kb on - strand, within HP15_3417 at 3592.617 kb on - strand, within HP15_3417 at 3592.627 kb on - strand, within HP15_3417 at 3592.664 kb on - strand, within HP15_3417 at 3592.684 kb on + strand, within HP15_3417 at 3592.728 kb on - strand, within HP15_3417 at 3592.817 kb on + strand, within HP15_3417 at 3592.840 kb on + strand, within HP15_3417 at 3592.847 kb on + strand, within HP15_3417 at 3592.863 kb on + strand, within HP15_3417 at 3592.866 kb on - strand, within HP15_3417 at 3592.912 kb on + strand, within HP15_3417 at 3592.945 kb on - strand, within HP15_3417 at 3592.953 kb on + strand, within HP15_3417 at 3592.993 kb on - strand at 3593.022 kb on - strand at 3593.034 kb on + strand at 3593.052 kb on - strand at 3593.066 kb on - strand at 3593.104 kb on - strand at 3593.258 kb on + strand at 3593.297 kb on + strand, within HP15_3418 at 3593.358 kb on + strand, within HP15_3418 at 3593.479 kb on - strand, within HP15_3418 at 3593.512 kb on + strand, within HP15_3418 at 3593.547 kb on + strand, within HP15_3418 at 3593.596 kb on + strand, within HP15_3418 at 3593.617 kb on - strand, within HP15_3418 at 3593.641 kb on + strand, within HP15_3418 at 3593.683 kb on - strand, within HP15_3418 at 3593.774 kb on + strand, within HP15_3418 at 3593.969 kb on + strand, within HP15_3418 at 3594.006 kb on + strand, within HP15_3418 at 3594.036 kb on + strand, within HP15_3418 at 3594.041 kb on + strand, within HP15_3418 at 3594.049 kb on - strand, within HP15_3418 at 3594.093 kb on + strand, within HP15_3418 at 3594.120 kb on + strand, within HP15_3418 at 3594.123 kb on - strand, within HP15_3418 at 3594.205 kb on + strand, within HP15_3418 at 3594.243 kb on - strand, within HP15_3418 at 3594.264 kb on + strand, within HP15_3418 at 3594.267 kb on - strand, within HP15_3418 at 3594.267 kb on - strand, within HP15_3418 at 3594.272 kb on - strand, within HP15_3418 at 3594.272 kb on - strand, within HP15_3418 at 3594.272 kb on - strand, within HP15_3418 at 3594.285 kb on - strand, within HP15_3418 at 3594.333 kb on - strand at 3594.346 kb on + strand at 3594.348 kb on + strand at 3594.540 kb on + strand, within HP15_3419 at 3594.566 kb on + strand, within HP15_3419 at 3594.574 kb on - strand, within HP15_3419 at 3594.719 kb on + strand, within HP15_3419 at 3594.763 kb on + strand, within HP15_3419 at 3594.784 kb on + strand, within HP15_3419 at 3594.848 kb on + strand, within HP15_3419 at 3594.873 kb on + strand, within HP15_3419 at 3594.939 kb on - strand, within HP15_3419 at 3594.939 kb on - strand, within HP15_3419 at 3595.050 kb on + strand, within HP15_3419 at 3595.058 kb on - strand, within HP15_3419 at 3595.107 kb on + strand, within HP15_3419 at 3595.107 kb on + strand, within HP15_3419 at 3595.115 kb on - strand, within HP15_3419 at 3595.115 kb on - strand, within HP15_3419 at 3595.115 kb on - strand, within HP15_3419 at 3595.115 kb on - strand, within HP15_3419 at 3595.130 kb on - strand, within HP15_3419 at 3595.148 kb on + strand, within HP15_3419 at 3595.153 kb on + strand, within HP15_3419 at 3595.311 kb on - strand at 3595.390 kb on + strand at 3595.398 kb on - strand at 3595.398 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 3,592,165 - HP15_3416 0.89 -0.9 3,592,258 - +0.3 3,592,272 + +0.4 3,592,311 - +0.0 3,592,358 + -0.4 3,592,358 + +1.3 3,592,387 + HP15_3417 0.12 +1.3 3,592,411 + HP15_3417 0.15 -1.4 3,592,441 + HP15_3417 0.19 -0.8 3,592,467 - HP15_3417 0.23 +1.6 3,592,516 - HP15_3417 0.30 +0.8 3,592,571 + HP15_3417 0.37 -0.9 3,592,571 + HP15_3417 0.37 -0.2 3,592,571 + HP15_3417 0.37 -0.8 3,592,579 - HP15_3417 0.38 -0.8 3,592,617 - HP15_3417 0.43 +1.9 3,592,627 - HP15_3417 0.45 -0.5 3,592,664 - HP15_3417 0.50 +1.7 3,592,684 + HP15_3417 0.53 +0.1 3,592,728 - HP15_3417 0.59 -0.5 3,592,817 + HP15_3417 0.71 -0.3 3,592,840 + HP15_3417 0.74 +0.6 3,592,847 + HP15_3417 0.75 +1.6 3,592,863 + HP15_3417 0.77 -1.2 3,592,866 - HP15_3417 0.78 -0.9 3,592,912 + HP15_3417 0.84 -2.5 3,592,945 - HP15_3417 0.88 -1.4 3,592,953 + HP15_3417 0.90 +0.7 3,592,993 - -0.2 3,593,022 - +1.0 3,593,034 + +0.8 3,593,052 - -0.5 3,593,066 - -0.5 3,593,104 - -1.2 3,593,258 + +1.5 3,593,297 + HP15_3418 0.11 +1.2 3,593,358 + HP15_3418 0.16 +1.0 3,593,479 - HP15_3418 0.26 +1.2 3,593,512 + HP15_3418 0.28 -0.1 3,593,547 + HP15_3418 0.31 -0.4 3,593,596 + HP15_3418 0.35 +2.0 3,593,617 - HP15_3418 0.36 +2.6 3,593,641 + HP15_3418 0.38 +0.6 3,593,683 - HP15_3418 0.42 +1.1 3,593,774 + HP15_3418 0.49 +2.8 3,593,969 + HP15_3418 0.64 +0.5 3,594,006 + HP15_3418 0.67 +0.3 3,594,036 + HP15_3418 0.69 -0.1 3,594,041 + HP15_3418 0.70 +1.8 3,594,049 - HP15_3418 0.70 -0.2 3,594,093 + HP15_3418 0.74 +0.7 3,594,120 + HP15_3418 0.76 +2.3 3,594,123 - HP15_3418 0.76 +1.3 3,594,205 + HP15_3418 0.83 -0.2 3,594,243 - HP15_3418 0.86 -0.2 3,594,264 + HP15_3418 0.87 +0.6 3,594,267 - HP15_3418 0.88 -0.4 3,594,267 - HP15_3418 0.88 +1.0 3,594,272 - HP15_3418 0.88 +1.3 3,594,272 - HP15_3418 0.88 +0.3 3,594,272 - HP15_3418 0.88 -0.3 3,594,285 - HP15_3418 0.89 +1.2 3,594,333 - +1.6 3,594,346 + +0.4 3,594,348 + -0.5 3,594,540 + HP15_3419 0.12 -1.5 3,594,566 + HP15_3419 0.15 -0.5 3,594,574 - HP15_3419 0.16 -0.8 3,594,719 + HP15_3419 0.33 +0.7 3,594,763 + HP15_3419 0.38 +3.3 3,594,784 + HP15_3419 0.41 -1.0 3,594,848 + HP15_3419 0.49 -0.9 3,594,873 + HP15_3419 0.52 -0.2 3,594,939 - HP15_3419 0.59 +0.0 3,594,939 - HP15_3419 0.59 -0.8 3,595,050 + HP15_3419 0.73 -0.7 3,595,058 - HP15_3419 0.74 -0.9 3,595,107 + HP15_3419 0.80 -0.2 3,595,107 + HP15_3419 0.80 -0.3 3,595,115 - HP15_3419 0.81 +0.0 3,595,115 - HP15_3419 0.81 -0.6 3,595,115 - HP15_3419 0.81 +1.8 3,595,115 - HP15_3419 0.81 -0.1 3,595,130 - HP15_3419 0.82 -0.7 3,595,148 + HP15_3419 0.85 +0.2 3,595,153 + HP15_3419 0.85 -1.8 3,595,311 - -0.1 3,595,390 + -0.5 3,595,398 - -0.7 3,595,398 - +0.2
Or see this region's nucleotide sequence