Strain Fitness in Marinobacter adhaerens HP15 around HP15_3418

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3416 and HP15_3417 overlap by 2 nucleotidesHP15_3417 and HP15_3418 are separated by 125 nucleotidesHP15_3418 and HP15_3419 are separated by 17 nucleotidesHP15_3419 and HP15_3420 are separated by 128 nucleotides HP15_3416: HP15_3416 - conserved hypothetical protein, at 3,591,027 to 3,592,301 _3416 HP15_3417: HP15_3417 - RNA methyltransferase, TrmH family, group 1, at 3,592,300 to 3,593,028 _3417 HP15_3418: HP15_3418 - D-amino acid dehydrogenase small subunit, at 3,593,154 to 3,594,425 _3418 HP15_3419: HP15_3419 - polyphosphate kinase 2, predicted, at 3,594,443 to 3,595,276 _3419 HP15_3420: HP15_3420 - hydrolase, TatD family, at 3,595,405 to 3,596,214 _3420 Position (kb) 3593 3594 3595Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3592.165 kb on - strand, within HP15_3416at 3592.258 kb on - strandat 3592.272 kb on + strandat 3592.311 kb on - strandat 3592.358 kb on + strandat 3592.358 kb on + strandat 3592.387 kb on + strand, within HP15_3417at 3592.411 kb on + strand, within HP15_3417at 3592.441 kb on + strand, within HP15_3417at 3592.467 kb on - strand, within HP15_3417at 3592.516 kb on - strand, within HP15_3417at 3592.571 kb on + strand, within HP15_3417at 3592.571 kb on + strand, within HP15_3417at 3592.571 kb on + strand, within HP15_3417at 3592.579 kb on - strand, within HP15_3417at 3592.617 kb on - strand, within HP15_3417at 3592.627 kb on - strand, within HP15_3417at 3592.664 kb on - strand, within HP15_3417at 3592.684 kb on + strand, within HP15_3417at 3592.728 kb on - strand, within HP15_3417at 3592.817 kb on + strand, within HP15_3417at 3592.840 kb on + strand, within HP15_3417at 3592.847 kb on + strand, within HP15_3417at 3592.863 kb on + strand, within HP15_3417at 3592.866 kb on - strand, within HP15_3417at 3592.912 kb on + strand, within HP15_3417at 3592.945 kb on - strand, within HP15_3417at 3592.953 kb on + strand, within HP15_3417at 3592.993 kb on - strandat 3593.022 kb on - strandat 3593.034 kb on + strandat 3593.052 kb on - strandat 3593.066 kb on - strandat 3593.104 kb on - strandat 3593.258 kb on + strandat 3593.297 kb on + strand, within HP15_3418at 3593.358 kb on + strand, within HP15_3418at 3593.479 kb on - strand, within HP15_3418at 3593.512 kb on + strand, within HP15_3418at 3593.547 kb on + strand, within HP15_3418at 3593.596 kb on + strand, within HP15_3418at 3593.617 kb on - strand, within HP15_3418at 3593.641 kb on + strand, within HP15_3418at 3593.683 kb on - strand, within HP15_3418at 3593.774 kb on + strand, within HP15_3418at 3593.969 kb on + strand, within HP15_3418at 3594.006 kb on + strand, within HP15_3418at 3594.036 kb on + strand, within HP15_3418at 3594.041 kb on + strand, within HP15_3418at 3594.049 kb on - strand, within HP15_3418at 3594.093 kb on + strand, within HP15_3418at 3594.120 kb on + strand, within HP15_3418at 3594.123 kb on - strand, within HP15_3418at 3594.205 kb on + strand, within HP15_3418at 3594.243 kb on - strand, within HP15_3418at 3594.264 kb on + strand, within HP15_3418at 3594.267 kb on - strand, within HP15_3418at 3594.267 kb on - strand, within HP15_3418at 3594.272 kb on - strand, within HP15_3418at 3594.272 kb on - strand, within HP15_3418at 3594.272 kb on - strand, within HP15_3418at 3594.285 kb on - strand, within HP15_3418at 3594.333 kb on - strandat 3594.346 kb on + strandat 3594.348 kb on + strandat 3594.540 kb on + strand, within HP15_3419at 3594.566 kb on + strand, within HP15_3419at 3594.574 kb on - strand, within HP15_3419at 3594.719 kb on + strand, within HP15_3419at 3594.763 kb on + strand, within HP15_3419at 3594.784 kb on + strand, within HP15_3419at 3594.848 kb on + strand, within HP15_3419at 3594.873 kb on + strand, within HP15_3419at 3594.939 kb on - strand, within HP15_3419at 3594.939 kb on - strand, within HP15_3419at 3595.050 kb on + strand, within HP15_3419at 3595.058 kb on - strand, within HP15_3419at 3595.107 kb on + strand, within HP15_3419at 3595.107 kb on + strand, within HP15_3419at 3595.115 kb on - strand, within HP15_3419at 3595.115 kb on - strand, within HP15_3419at 3595.115 kb on - strand, within HP15_3419at 3595.115 kb on - strand, within HP15_3419at 3595.130 kb on - strand, within HP15_3419at 3595.148 kb on + strand, within HP15_3419at 3595.153 kb on + strand, within HP15_3419at 3595.311 kb on - strandat 3595.390 kb on + strandat 3595.398 kb on - strandat 3595.398 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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3,592,165 - HP15_3416 0.89 -0.9
3,592,258 - +0.3
3,592,272 + +0.4
3,592,311 - +0.0
3,592,358 + -0.4
3,592,358 + +1.3
3,592,387 + HP15_3417 0.12 +1.3
3,592,411 + HP15_3417 0.15 -1.4
3,592,441 + HP15_3417 0.19 -0.8
3,592,467 - HP15_3417 0.23 +1.6
3,592,516 - HP15_3417 0.30 +0.8
3,592,571 + HP15_3417 0.37 -0.9
3,592,571 + HP15_3417 0.37 -0.2
3,592,571 + HP15_3417 0.37 -0.8
3,592,579 - HP15_3417 0.38 -0.8
3,592,617 - HP15_3417 0.43 +1.9
3,592,627 - HP15_3417 0.45 -0.5
3,592,664 - HP15_3417 0.50 +1.7
3,592,684 + HP15_3417 0.53 +0.1
3,592,728 - HP15_3417 0.59 -0.5
3,592,817 + HP15_3417 0.71 -0.3
3,592,840 + HP15_3417 0.74 +0.6
3,592,847 + HP15_3417 0.75 +1.6
3,592,863 + HP15_3417 0.77 -1.2
3,592,866 - HP15_3417 0.78 -0.9
3,592,912 + HP15_3417 0.84 -2.5
3,592,945 - HP15_3417 0.88 -1.4
3,592,953 + HP15_3417 0.90 +0.7
3,592,993 - -0.2
3,593,022 - +1.0
3,593,034 + +0.8
3,593,052 - -0.5
3,593,066 - -0.5
3,593,104 - -1.2
3,593,258 + +1.5
3,593,297 + HP15_3418 0.11 +1.2
3,593,358 + HP15_3418 0.16 +1.0
3,593,479 - HP15_3418 0.26 +1.2
3,593,512 + HP15_3418 0.28 -0.1
3,593,547 + HP15_3418 0.31 -0.4
3,593,596 + HP15_3418 0.35 +2.0
3,593,617 - HP15_3418 0.36 +2.6
3,593,641 + HP15_3418 0.38 +0.6
3,593,683 - HP15_3418 0.42 +1.1
3,593,774 + HP15_3418 0.49 +2.8
3,593,969 + HP15_3418 0.64 +0.5
3,594,006 + HP15_3418 0.67 +0.3
3,594,036 + HP15_3418 0.69 -0.1
3,594,041 + HP15_3418 0.70 +1.8
3,594,049 - HP15_3418 0.70 -0.2
3,594,093 + HP15_3418 0.74 +0.7
3,594,120 + HP15_3418 0.76 +2.3
3,594,123 - HP15_3418 0.76 +1.3
3,594,205 + HP15_3418 0.83 -0.2
3,594,243 - HP15_3418 0.86 -0.2
3,594,264 + HP15_3418 0.87 +0.6
3,594,267 - HP15_3418 0.88 -0.4
3,594,267 - HP15_3418 0.88 +1.0
3,594,272 - HP15_3418 0.88 +1.3
3,594,272 - HP15_3418 0.88 +0.3
3,594,272 - HP15_3418 0.88 -0.3
3,594,285 - HP15_3418 0.89 +1.2
3,594,333 - +1.6
3,594,346 + +0.4
3,594,348 + -0.5
3,594,540 + HP15_3419 0.12 -1.5
3,594,566 + HP15_3419 0.15 -0.5
3,594,574 - HP15_3419 0.16 -0.8
3,594,719 + HP15_3419 0.33 +0.7
3,594,763 + HP15_3419 0.38 +3.3
3,594,784 + HP15_3419 0.41 -1.0
3,594,848 + HP15_3419 0.49 -0.9
3,594,873 + HP15_3419 0.52 -0.2
3,594,939 - HP15_3419 0.59 +0.0
3,594,939 - HP15_3419 0.59 -0.8
3,595,050 + HP15_3419 0.73 -0.7
3,595,058 - HP15_3419 0.74 -0.9
3,595,107 + HP15_3419 0.80 -0.2
3,595,107 + HP15_3419 0.80 -0.3
3,595,115 - HP15_3419 0.81 +0.0
3,595,115 - HP15_3419 0.81 -0.6
3,595,115 - HP15_3419 0.81 +1.8
3,595,115 - HP15_3419 0.81 -0.1
3,595,130 - HP15_3419 0.82 -0.7
3,595,148 + HP15_3419 0.85 +0.2
3,595,153 + HP15_3419 0.85 -1.8
3,595,311 - -0.1
3,595,390 + -0.5
3,595,398 - -0.7
3,595,398 - +0.2

Or see this region's nucleotide sequence