Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3402 and HP15_3403 are separated by 234 nucleotides HP15_3403 and HP15_3404 are separated by 240 nucleotides
HP15_3402: HP15_3402 - undecaprenyl pyrophosphate phosphatase, at 3,572,938 to 3,573,735
_3402
HP15_3403: HP15_3403 - UvrD/REP helicase, at 3,573,970 to 3,576,135
_3403
HP15_3404: HP15_3404 - succinic semialdehyde dehydrogenase, at 3,576,376 to 3,577,827
_3404
Position (kb)
3573
3574
3575
3576
3577 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3573.767 kb on + strand at 3573.782 kb on + strand at 3573.829 kb on + strand at 3573.916 kb on + strand at 3573.945 kb on + strand at 3573.945 kb on + strand at 3573.945 kb on + strand at 3573.945 kb on + strand at 3573.945 kb on + strand at 3573.945 kb on + strand at 3574.114 kb on - strand at 3574.116 kb on + strand at 3574.125 kb on - strand at 3574.255 kb on - strand, within HP15_3403 at 3574.315 kb on + strand, within HP15_3403 at 3574.421 kb on - strand, within HP15_3403 at 3574.452 kb on + strand, within HP15_3403 at 3574.452 kb on - strand, within HP15_3403 at 3574.549 kb on - strand, within HP15_3403 at 3574.621 kb on + strand, within HP15_3403 at 3574.621 kb on + strand, within HP15_3403 at 3574.748 kb on + strand, within HP15_3403 at 3574.766 kb on + strand, within HP15_3403 at 3574.777 kb on + strand, within HP15_3403 at 3574.777 kb on + strand, within HP15_3403 at 3574.786 kb on - strand, within HP15_3403 at 3575.048 kb on + strand, within HP15_3403 at 3575.048 kb on + strand, within HP15_3403 at 3575.056 kb on - strand, within HP15_3403 at 3575.236 kb on - strand, within HP15_3403 at 3575.271 kb on + strand, within HP15_3403 at 3575.376 kb on - strand, within HP15_3403 at 3575.380 kb on - strand, within HP15_3403 at 3575.538 kb on + strand, within HP15_3403 at 3575.726 kb on + strand, within HP15_3403 at 3575.799 kb on - strand, within HP15_3403 at 3575.993 kb on + strand at 3575.993 kb on + strand at 3576.111 kb on + strand at 3576.213 kb on + strand at 3576.253 kb on + strand at 3576.253 kb on + strand at 3576.256 kb on + strand at 3576.256 kb on + strand at 3576.266 kb on - strand at 3576.266 kb on - strand at 3576.321 kb on + strand at 3576.321 kb on + strand at 3576.321 kb on + strand at 3576.634 kb on + strand, within HP15_3404 at 3576.634 kb on + strand, within HP15_3404 at 3576.724 kb on + strand, within HP15_3404 at 3576.791 kb on + strand, within HP15_3404 at 3576.866 kb on - strand, within HP15_3404 at 3576.892 kb on - strand, within HP15_3404 at 3577.076 kb on + strand, within HP15_3404 at 3577.084 kb on - strand, within HP15_3404
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 3,573,767 + -0.4 3,573,782 + -0.5 3,573,829 + -0.6 3,573,916 + +2.0 3,573,945 + -0.8 3,573,945 + +0.1 3,573,945 + -0.0 3,573,945 + +1.1 3,573,945 + -0.5 3,573,945 + -0.7 3,574,114 - +1.7 3,574,116 + +1.3 3,574,125 - -0.8 3,574,255 - HP15_3403 0.13 +0.2 3,574,315 + HP15_3403 0.16 +1.0 3,574,421 - HP15_3403 0.21 +2.7 3,574,452 + HP15_3403 0.22 +2.0 3,574,452 - HP15_3403 0.22 -0.3 3,574,549 - HP15_3403 0.27 -0.3 3,574,621 + HP15_3403 0.30 +1.7 3,574,621 + HP15_3403 0.30 +1.7 3,574,748 + HP15_3403 0.36 -0.0 3,574,766 + HP15_3403 0.37 +2.3 3,574,777 + HP15_3403 0.37 -0.2 3,574,777 + HP15_3403 0.37 +3.3 3,574,786 - HP15_3403 0.38 -1.2 3,575,048 + HP15_3403 0.50 +0.8 3,575,048 + HP15_3403 0.50 +3.3 3,575,056 - HP15_3403 0.50 +1.1 3,575,236 - HP15_3403 0.58 +1.7 3,575,271 + HP15_3403 0.60 +0.3 3,575,376 - HP15_3403 0.65 -1.5 3,575,380 - HP15_3403 0.65 -1.0 3,575,538 + HP15_3403 0.72 +1.3 3,575,726 + HP15_3403 0.81 +1.4 3,575,799 - HP15_3403 0.84 +0.9 3,575,993 + +1.7 3,575,993 + +1.9 3,576,111 + -0.5 3,576,213 + -0.7 3,576,253 + +1.7 3,576,253 + -0.4 3,576,256 + +0.3 3,576,256 + +0.2 3,576,266 - -0.5 3,576,266 - -0.4 3,576,321 + -0.0 3,576,321 + -0.5 3,576,321 + -0.0 3,576,634 + HP15_3404 0.18 +1.7 3,576,634 + HP15_3404 0.18 -1.0 3,576,724 + HP15_3404 0.24 +0.1 3,576,791 + HP15_3404 0.29 +0.1 3,576,866 - HP15_3404 0.34 +0.0 3,576,892 - HP15_3404 0.36 +0.0 3,577,076 + HP15_3404 0.48 +0.3 3,577,084 - HP15_3404 0.49 -0.0
Or see this region's nucleotide sequence