Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3127 and HP15_3128 are separated by 11 nucleotides HP15_3128 and HP15_3129 are separated by 112 nucleotides HP15_3129 and HP15_3130 are separated by 135 nucleotides
HP15_3127: HP15_3127 - methionine sulfoxide reductase B, at 3,279,985 to 3,280,410
_3127
HP15_3128: HP15_3128 - methionine sulfoxide reductase A, at 3,280,422 to 3,281,075
_3128
HP15_3129: HP15_3129 - chromate transporter, at 3,281,188 to 3,282,369
_3129
HP15_3130: HP15_3130 - phosphohydrolase, at 3,282,505 to 3,283,509
_3130
Position (kb)
3281
3282
3283 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3280.216 kb on + strand, within HP15_3127 at 3280.522 kb on + strand, within HP15_3128 at 3280.603 kb on - strand, within HP15_3128 at 3280.715 kb on - strand, within HP15_3128 at 3280.715 kb on - strand, within HP15_3128 at 3280.725 kb on - strand, within HP15_3128 at 3280.762 kb on + strand, within HP15_3128 at 3280.809 kb on + strand, within HP15_3128 at 3280.815 kb on - strand, within HP15_3128 at 3280.971 kb on - strand, within HP15_3128 at 3280.993 kb on - strand, within HP15_3128 at 3281.015 kb on - strand at 3281.089 kb on - strand at 3281.101 kb on + strand at 3281.154 kb on - strand at 3281.382 kb on + strand, within HP15_3129 at 3281.486 kb on + strand, within HP15_3129 at 3281.551 kb on + strand, within HP15_3129 at 3281.554 kb on - strand, within HP15_3129 at 3281.564 kb on - strand, within HP15_3129 at 3281.571 kb on - strand, within HP15_3129 at 3281.620 kb on - strand, within HP15_3129 at 3281.627 kb on - strand, within HP15_3129 at 3281.627 kb on - strand, within HP15_3129 at 3281.682 kb on - strand, within HP15_3129 at 3281.719 kb on - strand, within HP15_3129 at 3281.794 kb on - strand, within HP15_3129 at 3281.836 kb on + strand, within HP15_3129 at 3281.892 kb on + strand, within HP15_3129 at 3281.949 kb on + strand, within HP15_3129 at 3282.057 kb on + strand, within HP15_3129 at 3282.057 kb on + strand, within HP15_3129 at 3282.065 kb on - strand, within HP15_3129 at 3282.123 kb on + strand, within HP15_3129 at 3282.136 kb on + strand, within HP15_3129 at 3282.141 kb on + strand, within HP15_3129 at 3282.152 kb on + strand, within HP15_3129 at 3282.185 kb on + strand, within HP15_3129 at 3282.220 kb on + strand, within HP15_3129 at 3282.480 kb on + strand at 3282.554 kb on - strand at 3282.564 kb on - strand at 3282.610 kb on + strand, within HP15_3130 at 3282.610 kb on + strand, within HP15_3130 at 3282.618 kb on - strand, within HP15_3130 at 3282.618 kb on - strand, within HP15_3130 at 3282.713 kb on + strand, within HP15_3130 at 3282.757 kb on + strand, within HP15_3130 at 3282.783 kb on - strand, within HP15_3130 at 3282.903 kb on - strand, within HP15_3130 at 3282.903 kb on - strand, within HP15_3130 at 3282.950 kb on + strand, within HP15_3130 at 3283.011 kb on - strand, within HP15_3130 at 3283.021 kb on + strand, within HP15_3130 at 3283.044 kb on - strand, within HP15_3130 at 3283.132 kb on + strand, within HP15_3130 at 3283.133 kb on + strand, within HP15_3130 at 3283.138 kb on + strand, within HP15_3130 at 3283.140 kb on - strand, within HP15_3130 at 3283.140 kb on - strand, within HP15_3130 at 3283.171 kb on - strand, within HP15_3130 at 3283.187 kb on + strand, within HP15_3130 at 3283.209 kb on - strand, within HP15_3130 at 3283.236 kb on + strand, within HP15_3130 at 3283.241 kb on + strand, within HP15_3130 at 3283.249 kb on - strand, within HP15_3130 at 3283.315 kb on + strand, within HP15_3130 at 3283.323 kb on - strand, within HP15_3130 at 3283.323 kb on - strand, within HP15_3130
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 3,280,216 + HP15_3127 0.54 +1.8 3,280,522 + HP15_3128 0.15 +1.6 3,280,603 - HP15_3128 0.28 -0.3 3,280,715 - HP15_3128 0.45 +2.5 3,280,715 - HP15_3128 0.45 +1.5 3,280,725 - HP15_3128 0.46 +0.9 3,280,762 + HP15_3128 0.52 +1.4 3,280,809 + HP15_3128 0.59 +1.1 3,280,815 - HP15_3128 0.60 +0.8 3,280,971 - HP15_3128 0.84 -0.6 3,280,993 - HP15_3128 0.87 -0.4 3,281,015 - +0.2 3,281,089 - -1.1 3,281,101 + -0.4 3,281,154 - +1.9 3,281,382 + HP15_3129 0.16 -0.6 3,281,486 + HP15_3129 0.25 -0.5 3,281,551 + HP15_3129 0.31 +0.8 3,281,554 - HP15_3129 0.31 -0.7 3,281,564 - HP15_3129 0.32 -0.4 3,281,571 - HP15_3129 0.32 +0.8 3,281,620 - HP15_3129 0.37 +1.1 3,281,627 - HP15_3129 0.37 -0.8 3,281,627 - HP15_3129 0.37 +1.4 3,281,682 - HP15_3129 0.42 -1.2 3,281,719 - HP15_3129 0.45 +0.9 3,281,794 - HP15_3129 0.51 -0.6 3,281,836 + HP15_3129 0.55 +0.2 3,281,892 + HP15_3129 0.60 -0.6 3,281,949 + HP15_3129 0.64 -0.5 3,282,057 + HP15_3129 0.74 +1.4 3,282,057 + HP15_3129 0.74 +0.2 3,282,065 - HP15_3129 0.74 +0.3 3,282,123 + HP15_3129 0.79 -1.4 3,282,136 + HP15_3129 0.80 +2.6 3,282,141 + HP15_3129 0.81 +1.3 3,282,152 + HP15_3129 0.82 -0.6 3,282,185 + HP15_3129 0.84 +1.1 3,282,220 + HP15_3129 0.87 -1.3 3,282,480 + +0.8 3,282,554 - +0.3 3,282,564 - +0.2 3,282,610 + HP15_3130 0.10 -1.0 3,282,610 + HP15_3130 0.10 -1.1 3,282,618 - HP15_3130 0.11 -0.0 3,282,618 - HP15_3130 0.11 -0.5 3,282,713 + HP15_3130 0.21 -1.4 3,282,757 + HP15_3130 0.25 -1.2 3,282,783 - HP15_3130 0.28 +1.6 3,282,903 - HP15_3130 0.40 -0.7 3,282,903 - HP15_3130 0.40 +1.6 3,282,950 + HP15_3130 0.44 +1.8 3,283,011 - HP15_3130 0.50 -1.2 3,283,021 + HP15_3130 0.51 +0.0 3,283,044 - HP15_3130 0.54 +0.6 3,283,132 + HP15_3130 0.62 -0.2 3,283,133 + HP15_3130 0.62 -0.1 3,283,138 + HP15_3130 0.63 -0.5 3,283,140 - HP15_3130 0.63 +1.6 3,283,140 - HP15_3130 0.63 +0.1 3,283,171 - HP15_3130 0.66 +0.1 3,283,187 + HP15_3130 0.68 -0.6 3,283,209 - HP15_3130 0.70 +0.3 3,283,236 + HP15_3130 0.73 +0.2 3,283,241 + HP15_3130 0.73 -0.3 3,283,249 - HP15_3130 0.74 -0.1 3,283,315 + HP15_3130 0.81 -0.2 3,283,323 - HP15_3130 0.81 -2.8 3,283,323 - HP15_3130 0.81 -2.2
Or see this region's nucleotide sequence