Strain Fitness in Marinobacter adhaerens HP15 around HP15_3037

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3036 and HP15_3037 are separated by 151 nucleotidesHP15_3037 and HP15_3038 are separated by 22 nucleotides HP15_3036: HP15_3036 - efflux transporter, RND family, MFP subunit, at 3,182,051 to 3,183,145 _3036 HP15_3037: HP15_3037 - transcriptional regulator, TetR family protein, at 3,183,297 to 3,183,932 _3037 HP15_3038: HP15_3038 - N-succinylarginine dihydrolase, at 3,183,955 to 3,185,295 _3038 Position (kb) 3183 3184Strain fitness (log2 ratio) -1 0 1 2 3at 3182.319 kb on - strand, within HP15_3036at 3182.367 kb on + strand, within HP15_3036at 3182.372 kb on + strand, within HP15_3036at 3182.382 kb on + strand, within HP15_3036at 3182.428 kb on - strand, within HP15_3036at 3182.447 kb on - strand, within HP15_3036at 3182.447 kb on - strand, within HP15_3036at 3182.491 kb on + strand, within HP15_3036at 3182.499 kb on - strand, within HP15_3036at 3182.504 kb on + strand, within HP15_3036at 3182.574 kb on + strand, within HP15_3036at 3182.574 kb on + strand, within HP15_3036at 3182.582 kb on - strand, within HP15_3036at 3182.620 kb on - strand, within HP15_3036at 3182.668 kb on + strand, within HP15_3036at 3182.676 kb on - strand, within HP15_3036at 3182.676 kb on - strand, within HP15_3036at 3182.688 kb on + strand, within HP15_3036at 3182.696 kb on - strand, within HP15_3036at 3182.714 kb on + strand, within HP15_3036at 3182.749 kb on + strand, within HP15_3036at 3182.789 kb on - strand, within HP15_3036at 3182.801 kb on + strand, within HP15_3036at 3182.864 kb on + strand, within HP15_3036at 3182.907 kb on - strand, within HP15_3036at 3182.907 kb on - strand, within HP15_3036at 3183.046 kb on - strandat 3183.362 kb on - strand, within HP15_3037at 3183.413 kb on - strand, within HP15_3037at 3183.695 kb on - strand, within HP15_3037at 3183.803 kb on - strand, within HP15_3037at 3183.813 kb on + strand, within HP15_3037at 3183.813 kb on + strand, within HP15_3037at 3183.813 kb on + strand, within HP15_3037at 3183.831 kb on - strand, within HP15_3037at 3183.857 kb on + strand, within HP15_3037at 3183.865 kb on - strand, within HP15_3037at 3183.906 kb on - strandat 3184.014 kb on - strandat 3184.071 kb on - strandat 3184.114 kb on - strand, within HP15_3038at 3184.131 kb on - strand, within HP15_3038at 3184.179 kb on + strand, within HP15_3038at 3184.283 kb on + strand, within HP15_3038at 3184.286 kb on - strand, within HP15_3038at 3184.340 kb on + strand, within HP15_3038at 3184.368 kb on + strand, within HP15_3038at 3184.376 kb on - strand, within HP15_3038at 3184.508 kb on + strand, within HP15_3038at 3184.568 kb on + strand, within HP15_3038at 3184.643 kb on - strand, within HP15_3038at 3184.643 kb on - strand, within HP15_3038at 3184.760 kb on + strand, within HP15_3038at 3184.868 kb on - strand, within HP15_3038at 3184.931 kb on - strand, within HP15_3038

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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3,182,319 - HP15_3036 0.24 -1.2
3,182,367 + HP15_3036 0.29 -0.1
3,182,372 + HP15_3036 0.29 +2.2
3,182,382 + HP15_3036 0.30 -0.5
3,182,428 - HP15_3036 0.34 +1.3
3,182,447 - HP15_3036 0.36 +0.1
3,182,447 - HP15_3036 0.36 +0.9
3,182,491 + HP15_3036 0.40 -1.2
3,182,499 - HP15_3036 0.41 -1.0
3,182,504 + HP15_3036 0.41 +0.3
3,182,574 + HP15_3036 0.48 -0.5
3,182,574 + HP15_3036 0.48 -0.6
3,182,582 - HP15_3036 0.48 -0.5
3,182,620 - HP15_3036 0.52 -1.0
3,182,668 + HP15_3036 0.56 +1.3
3,182,676 - HP15_3036 0.57 -0.5
3,182,676 - HP15_3036 0.57 -0.2
3,182,688 + HP15_3036 0.58 -0.7
3,182,696 - HP15_3036 0.59 +0.2
3,182,714 + HP15_3036 0.61 +0.6
3,182,749 + HP15_3036 0.64 -0.6
3,182,789 - HP15_3036 0.67 -1.0
3,182,801 + HP15_3036 0.68 -0.4
3,182,864 + HP15_3036 0.74 -0.2
3,182,907 - HP15_3036 0.78 +2.1
3,182,907 - HP15_3036 0.78 -0.1
3,183,046 - +0.2
3,183,362 - HP15_3037 0.10 -1.5
3,183,413 - HP15_3037 0.18 +1.4
3,183,695 - HP15_3037 0.63 -0.8
3,183,803 - HP15_3037 0.80 -1.0
3,183,813 + HP15_3037 0.81 +0.2
3,183,813 + HP15_3037 0.81 -0.6
3,183,813 + HP15_3037 0.81 +2.0
3,183,831 - HP15_3037 0.84 -0.8
3,183,857 + HP15_3037 0.88 -0.5
3,183,865 - HP15_3037 0.89 -1.3
3,183,906 - +1.8
3,184,014 - +1.0
3,184,071 - +2.8
3,184,114 - HP15_3038 0.12 -0.3
3,184,131 - HP15_3038 0.13 +1.0
3,184,179 + HP15_3038 0.17 +2.2
3,184,283 + HP15_3038 0.24 -0.9
3,184,286 - HP15_3038 0.25 -1.1
3,184,340 + HP15_3038 0.29 -0.1
3,184,368 + HP15_3038 0.31 +1.9
3,184,376 - HP15_3038 0.31 +0.8
3,184,508 + HP15_3038 0.41 -0.6
3,184,568 + HP15_3038 0.46 -0.7
3,184,643 - HP15_3038 0.51 -0.9
3,184,643 - HP15_3038 0.51 +0.2
3,184,760 + HP15_3038 0.60 +0.9
3,184,868 - HP15_3038 0.68 +0.4
3,184,931 - HP15_3038 0.73 -0.8

Or see this region's nucleotide sequence