Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3036 and HP15_3037 are separated by 151 nucleotides HP15_3037 and HP15_3038 are separated by 22 nucleotides
HP15_3036: HP15_3036 - efflux transporter, RND family, MFP subunit, at 3,182,051 to 3,183,145
_3036
HP15_3037: HP15_3037 - transcriptional regulator, TetR family protein, at 3,183,297 to 3,183,932
_3037
HP15_3038: HP15_3038 - N-succinylarginine dihydrolase, at 3,183,955 to 3,185,295
_3038
Position (kb)
3183
3184 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3182.319 kb on - strand, within HP15_3036 at 3182.367 kb on + strand, within HP15_3036 at 3182.372 kb on + strand, within HP15_3036 at 3182.382 kb on + strand, within HP15_3036 at 3182.428 kb on - strand, within HP15_3036 at 3182.447 kb on - strand, within HP15_3036 at 3182.447 kb on - strand, within HP15_3036 at 3182.491 kb on + strand, within HP15_3036 at 3182.499 kb on - strand, within HP15_3036 at 3182.504 kb on + strand, within HP15_3036 at 3182.574 kb on + strand, within HP15_3036 at 3182.574 kb on + strand, within HP15_3036 at 3182.582 kb on - strand, within HP15_3036 at 3182.620 kb on - strand, within HP15_3036 at 3182.668 kb on + strand, within HP15_3036 at 3182.676 kb on - strand, within HP15_3036 at 3182.676 kb on - strand, within HP15_3036 at 3182.688 kb on + strand, within HP15_3036 at 3182.696 kb on - strand, within HP15_3036 at 3182.714 kb on + strand, within HP15_3036 at 3182.749 kb on + strand, within HP15_3036 at 3182.789 kb on - strand, within HP15_3036 at 3182.801 kb on + strand, within HP15_3036 at 3182.864 kb on + strand, within HP15_3036 at 3182.907 kb on - strand, within HP15_3036 at 3182.907 kb on - strand, within HP15_3036 at 3183.046 kb on - strand at 3183.362 kb on - strand, within HP15_3037 at 3183.413 kb on - strand, within HP15_3037 at 3183.695 kb on - strand, within HP15_3037 at 3183.803 kb on - strand, within HP15_3037 at 3183.813 kb on + strand, within HP15_3037 at 3183.813 kb on + strand, within HP15_3037 at 3183.813 kb on + strand, within HP15_3037 at 3183.831 kb on - strand, within HP15_3037 at 3183.857 kb on + strand, within HP15_3037 at 3183.865 kb on - strand, within HP15_3037 at 3183.906 kb on - strand at 3184.014 kb on - strand at 3184.071 kb on - strand at 3184.114 kb on - strand, within HP15_3038 at 3184.131 kb on - strand, within HP15_3038 at 3184.179 kb on + strand, within HP15_3038 at 3184.283 kb on + strand, within HP15_3038 at 3184.286 kb on - strand, within HP15_3038 at 3184.340 kb on + strand, within HP15_3038 at 3184.368 kb on + strand, within HP15_3038 at 3184.376 kb on - strand, within HP15_3038 at 3184.508 kb on + strand, within HP15_3038 at 3184.568 kb on + strand, within HP15_3038 at 3184.643 kb on - strand, within HP15_3038 at 3184.643 kb on - strand, within HP15_3038 at 3184.760 kb on + strand, within HP15_3038 at 3184.868 kb on - strand, within HP15_3038 at 3184.931 kb on - strand, within HP15_3038
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 3,182,319 - HP15_3036 0.24 -1.2 3,182,367 + HP15_3036 0.29 -0.1 3,182,372 + HP15_3036 0.29 +2.2 3,182,382 + HP15_3036 0.30 -0.5 3,182,428 - HP15_3036 0.34 +1.3 3,182,447 - HP15_3036 0.36 +0.1 3,182,447 - HP15_3036 0.36 +0.9 3,182,491 + HP15_3036 0.40 -1.2 3,182,499 - HP15_3036 0.41 -1.0 3,182,504 + HP15_3036 0.41 +0.3 3,182,574 + HP15_3036 0.48 -0.5 3,182,574 + HP15_3036 0.48 -0.6 3,182,582 - HP15_3036 0.48 -0.5 3,182,620 - HP15_3036 0.52 -1.0 3,182,668 + HP15_3036 0.56 +1.3 3,182,676 - HP15_3036 0.57 -0.5 3,182,676 - HP15_3036 0.57 -0.2 3,182,688 + HP15_3036 0.58 -0.7 3,182,696 - HP15_3036 0.59 +0.2 3,182,714 + HP15_3036 0.61 +0.6 3,182,749 + HP15_3036 0.64 -0.6 3,182,789 - HP15_3036 0.67 -1.0 3,182,801 + HP15_3036 0.68 -0.4 3,182,864 + HP15_3036 0.74 -0.2 3,182,907 - HP15_3036 0.78 +2.1 3,182,907 - HP15_3036 0.78 -0.1 3,183,046 - +0.2 3,183,362 - HP15_3037 0.10 -1.5 3,183,413 - HP15_3037 0.18 +1.4 3,183,695 - HP15_3037 0.63 -0.8 3,183,803 - HP15_3037 0.80 -1.0 3,183,813 + HP15_3037 0.81 +0.2 3,183,813 + HP15_3037 0.81 -0.6 3,183,813 + HP15_3037 0.81 +2.0 3,183,831 - HP15_3037 0.84 -0.8 3,183,857 + HP15_3037 0.88 -0.5 3,183,865 - HP15_3037 0.89 -1.3 3,183,906 - +1.8 3,184,014 - +1.0 3,184,071 - +2.8 3,184,114 - HP15_3038 0.12 -0.3 3,184,131 - HP15_3038 0.13 +1.0 3,184,179 + HP15_3038 0.17 +2.2 3,184,283 + HP15_3038 0.24 -0.9 3,184,286 - HP15_3038 0.25 -1.1 3,184,340 + HP15_3038 0.29 -0.1 3,184,368 + HP15_3038 0.31 +1.9 3,184,376 - HP15_3038 0.31 +0.8 3,184,508 + HP15_3038 0.41 -0.6 3,184,568 + HP15_3038 0.46 -0.7 3,184,643 - HP15_3038 0.51 -0.9 3,184,643 - HP15_3038 0.51 +0.2 3,184,760 + HP15_3038 0.60 +0.9 3,184,868 - HP15_3038 0.68 +0.4 3,184,931 - HP15_3038 0.73 -0.8
Or see this region's nucleotide sequence