Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2853 and HP15_2854 are separated by 48 nucleotides HP15_2854 and HP15_2855 are separated by 440 nucleotides
HP15_2853: HP15_2853 - sucrose phosphorylase, at 2,993,679 to 2,995,121
_2853
HP15_2854: HP15_2854 - conserved hypothetical protein, secreted, at 2,995,170 to 2,995,610
_2854
HP15_2855: HP15_2855 - short-chain dehydrogenase/reductase SDR, at 2,996,051 to 2,996,821
_2855
Position (kb)
2995
2996 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2994.182 kb on - strand, within HP15_2853 at 2994.199 kb on - strand, within HP15_2853 at 2994.258 kb on - strand, within HP15_2853 at 2994.298 kb on + strand, within HP15_2853 at 2994.430 kb on + strand, within HP15_2853 at 2994.438 kb on - strand, within HP15_2853 at 2994.633 kb on - strand, within HP15_2853 at 2994.684 kb on - strand, within HP15_2853 at 2994.780 kb on - strand, within HP15_2853 at 2994.780 kb on - strand, within HP15_2853 at 2994.787 kb on - strand, within HP15_2853 at 2994.814 kb on + strand, within HP15_2853 at 2995.149 kb on - strand at 2995.149 kb on - strand at 2995.149 kb on - strand at 2995.149 kb on - strand at 2995.167 kb on + strand at 2995.167 kb on - strand at 2995.184 kb on + strand at 2995.202 kb on + strand at 2995.310 kb on + strand, within HP15_2854 at 2995.371 kb on - strand, within HP15_2854 at 2995.431 kb on - strand, within HP15_2854 at 2995.432 kb on + strand, within HP15_2854 at 2995.432 kb on + strand, within HP15_2854 at 2995.432 kb on + strand, within HP15_2854 at 2995.435 kb on - strand, within HP15_2854 at 2995.508 kb on + strand, within HP15_2854 at 2995.531 kb on - strand, within HP15_2854 at 2995.668 kb on - strand at 2995.763 kb on + strand at 2995.810 kb on - strand at 2995.833 kb on - strand at 2995.860 kb on + strand at 2995.868 kb on - strand at 2995.924 kb on + strand at 2995.932 kb on - strand at 2996.028 kb on + strand at 2996.169 kb on + strand, within HP15_2855 at 2996.177 kb on + strand, within HP15_2855 at 2996.235 kb on + strand, within HP15_2855 at 2996.245 kb on + strand, within HP15_2855 at 2996.255 kb on - strand, within HP15_2855 at 2996.296 kb on + strand, within HP15_2855 at 2996.343 kb on - strand, within HP15_2855 at 2996.366 kb on - strand, within HP15_2855 at 2996.391 kb on + strand, within HP15_2855 at 2996.402 kb on + strand, within HP15_2855 at 2996.434 kb on - strand, within HP15_2855 at 2996.510 kb on - strand, within HP15_2855 at 2996.525 kb on - strand, within HP15_2855 at 2996.530 kb on + strand, within HP15_2855 at 2996.530 kb on + strand, within HP15_2855 at 2996.566 kb on + strand, within HP15_2855
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 2,994,182 - HP15_2853 0.35 -0.1 2,994,199 - HP15_2853 0.36 -1.0 2,994,258 - HP15_2853 0.40 +0.0 2,994,298 + HP15_2853 0.43 +0.4 2,994,430 + HP15_2853 0.52 +1.2 2,994,438 - HP15_2853 0.53 -0.9 2,994,633 - HP15_2853 0.66 -1.6 2,994,684 - HP15_2853 0.70 -0.4 2,994,780 - HP15_2853 0.76 -0.5 2,994,780 - HP15_2853 0.76 -0.3 2,994,787 - HP15_2853 0.77 -0.1 2,994,814 + HP15_2853 0.79 -1.7 2,995,149 - -0.8 2,995,149 - +0.1 2,995,149 - -0.7 2,995,149 - +1.4 2,995,167 + -0.1 2,995,167 - -1.5 2,995,184 + +0.9 2,995,202 + -0.8 2,995,310 + HP15_2854 0.32 -0.5 2,995,371 - HP15_2854 0.46 -1.1 2,995,431 - HP15_2854 0.59 +0.9 2,995,432 + HP15_2854 0.59 -0.0 2,995,432 + HP15_2854 0.59 -0.8 2,995,432 + HP15_2854 0.59 +1.0 2,995,435 - HP15_2854 0.60 +1.5 2,995,508 + HP15_2854 0.77 -0.3 2,995,531 - HP15_2854 0.82 -0.3 2,995,668 - -2.1 2,995,763 + -1.1 2,995,810 - -1.0 2,995,833 - +1.7 2,995,860 + -0.9 2,995,868 - +0.3 2,995,924 + -0.6 2,995,932 - +0.6 2,996,028 + +0.6 2,996,169 + HP15_2855 0.15 -1.1 2,996,177 + HP15_2855 0.16 -0.6 2,996,235 + HP15_2855 0.24 -0.1 2,996,245 + HP15_2855 0.25 -1.0 2,996,255 - HP15_2855 0.26 -0.6 2,996,296 + HP15_2855 0.32 +1.6 2,996,343 - HP15_2855 0.38 -0.8 2,996,366 - HP15_2855 0.41 +0.0 2,996,391 + HP15_2855 0.44 -3.1 2,996,402 + HP15_2855 0.46 +1.3 2,996,434 - HP15_2855 0.50 -0.8 2,996,510 - HP15_2855 0.60 -1.1 2,996,525 - HP15_2855 0.61 -0.0 2,996,530 + HP15_2855 0.62 +0.4 2,996,530 + HP15_2855 0.62 +1.4 2,996,566 + HP15_2855 0.67 +1.2
Or see this region's nucleotide sequence