Strain Fitness in Marinobacter adhaerens HP15 around HP15_2609

Experiment: DinoMM minimal media with L-Arginine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2607 and HP15_2608 are separated by 1 nucleotidesHP15_2608 and HP15_2609 are separated by 10 nucleotidesHP15_2609 and HP15_2610 are separated by 275 nucleotides HP15_2607: HP15_2607 - BNR repeat glycosyl hydrolase-like protein, at 2,759,326 to 2,760,303 _2607 HP15_2608: HP15_2608 - hydroxymethylglutaryl-CoA lyase, at 2,760,305 to 2,761,228 _2608 HP15_2609: HP15_2609 - acyl-CoA transferase/carnitine dehydratase, at 2,761,239 to 2,762,435 _2609 HP15_2610: HP15_2610 - D-amino acid dehydrogenase small subunit, at 2,762,711 to 2,763,994 _2610 Position (kb) 2761 2762 2763Strain fitness (log2 ratio) -2 -1 0 1 2at 2760.245 kb on + strandat 2760.258 kb on - strandat 2760.324 kb on + strandat 2760.337 kb on - strandat 2760.454 kb on - strand, within HP15_2608at 2760.482 kb on - strand, within HP15_2608at 2760.662 kb on + strand, within HP15_2608at 2760.670 kb on - strand, within HP15_2608at 2760.670 kb on - strand, within HP15_2608at 2760.677 kb on + strand, within HP15_2608at 2760.737 kb on - strand, within HP15_2608at 2760.742 kb on - strand, within HP15_2608at 2760.837 kb on - strand, within HP15_2608at 2760.882 kb on - strand, within HP15_2608at 2760.894 kb on - strand, within HP15_2608at 2760.952 kb on + strand, within HP15_2608at 2760.998 kb on + strand, within HP15_2608at 2761.003 kb on + strand, within HP15_2608at 2761.006 kb on - strand, within HP15_2608at 2761.011 kb on - strand, within HP15_2608at 2761.192 kb on - strandat 2761.243 kb on + strandat 2761.266 kb on - strandat 2761.299 kb on + strandat 2761.342 kb on + strandat 2761.363 kb on + strand, within HP15_2609at 2761.391 kb on + strand, within HP15_2609at 2761.415 kb on + strand, within HP15_2609at 2761.515 kb on - strand, within HP15_2609at 2761.515 kb on - strand, within HP15_2609at 2761.517 kb on + strand, within HP15_2609at 2761.537 kb on - strand, within HP15_2609at 2761.544 kb on - strand, within HP15_2609at 2761.551 kb on - strand, within HP15_2609at 2761.551 kb on - strand, within HP15_2609at 2761.566 kb on - strand, within HP15_2609at 2761.606 kb on + strand, within HP15_2609at 2761.647 kb on - strand, within HP15_2609at 2761.710 kb on + strand, within HP15_2609at 2761.862 kb on - strand, within HP15_2609at 2761.929 kb on + strand, within HP15_2609at 2761.937 kb on - strand, within HP15_2609at 2762.107 kb on + strand, within HP15_2609at 2762.107 kb on + strand, within HP15_2609at 2762.115 kb on - strand, within HP15_2609at 2762.171 kb on + strand, within HP15_2609at 2762.184 kb on + strand, within HP15_2609at 2762.314 kb on + strand, within HP15_2609at 2762.387 kb on + strandat 2762.450 kb on + strandat 2762.858 kb on + strand, within HP15_2610at 2762.959 kb on - strand, within HP15_2610at 2763.045 kb on + strand, within HP15_2610at 2763.128 kb on + strand, within HP15_2610at 2763.136 kb on - strand, within HP15_2610at 2763.188 kb on - strand, within HP15_2610at 2763.330 kb on + strand, within HP15_2610at 2763.347 kb on + strand, within HP15_2610at 2763.355 kb on - strand, within HP15_2610at 2763.359 kb on + strand, within HP15_2610at 2763.389 kb on + strand, within HP15_2610at 2763.389 kb on + strand, within HP15_2610at 2763.390 kb on - strand, within HP15_2610

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
remove
2,760,245 + -0.2
2,760,258 - +1.7
2,760,324 + -1.3
2,760,337 - -0.5
2,760,454 - HP15_2608 0.16 -1.5
2,760,482 - HP15_2608 0.19 +0.8
2,760,662 + HP15_2608 0.39 +1.5
2,760,670 - HP15_2608 0.40 -1.9
2,760,670 - HP15_2608 0.40 +0.0
2,760,677 + HP15_2608 0.40 -1.1
2,760,737 - HP15_2608 0.47 -0.8
2,760,742 - HP15_2608 0.47 -1.4
2,760,837 - HP15_2608 0.58 -1.0
2,760,882 - HP15_2608 0.62 +1.0
2,760,894 - HP15_2608 0.64 +0.0
2,760,952 + HP15_2608 0.70 +0.5
2,760,998 + HP15_2608 0.75 +2.0
2,761,003 + HP15_2608 0.76 -0.8
2,761,006 - HP15_2608 0.76 -1.2
2,761,011 - HP15_2608 0.76 -0.5
2,761,192 - +1.3
2,761,243 + -1.5
2,761,266 - -1.1
2,761,299 + +1.4
2,761,342 + +0.5
2,761,363 + HP15_2609 0.10 +2.1
2,761,391 + HP15_2609 0.13 -0.6
2,761,415 + HP15_2609 0.15 -2.0
2,761,515 - HP15_2609 0.23 -0.3
2,761,515 - HP15_2609 0.23 -0.8
2,761,517 + HP15_2609 0.23 +1.5
2,761,537 - HP15_2609 0.25 -1.0
2,761,544 - HP15_2609 0.25 +2.6
2,761,551 - HP15_2609 0.26 -1.4
2,761,551 - HP15_2609 0.26 -0.5
2,761,566 - HP15_2609 0.27 +1.7
2,761,606 + HP15_2609 0.31 -0.5
2,761,647 - HP15_2609 0.34 +0.9
2,761,710 + HP15_2609 0.39 -0.3
2,761,862 - HP15_2609 0.52 -0.2
2,761,929 + HP15_2609 0.58 +1.0
2,761,937 - HP15_2609 0.58 -0.0
2,762,107 + HP15_2609 0.73 -1.4
2,762,107 + HP15_2609 0.73 -0.0
2,762,115 - HP15_2609 0.73 -1.0
2,762,171 + HP15_2609 0.78 +1.5
2,762,184 + HP15_2609 0.79 -0.1
2,762,314 + HP15_2609 0.90 -0.5
2,762,387 + +2.3
2,762,450 + +0.0
2,762,858 + HP15_2610 0.11 -0.7
2,762,959 - HP15_2610 0.19 +2.4
2,763,045 + HP15_2610 0.26 -0.1
2,763,128 + HP15_2610 0.32 -0.5
2,763,136 - HP15_2610 0.33 +0.1
2,763,188 - HP15_2610 0.37 +1.5
2,763,330 + HP15_2610 0.48 +1.3
2,763,347 + HP15_2610 0.50 +0.2
2,763,355 - HP15_2610 0.50 -0.4
2,763,359 + HP15_2610 0.50 +0.9
2,763,389 + HP15_2610 0.53 -0.2
2,763,389 + HP15_2610 0.53 -1.3
2,763,390 - HP15_2610 0.53 +0.1

Or see this region's nucleotide sequence