Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2607 and HP15_2608 are separated by 1 nucleotides HP15_2608 and HP15_2609 are separated by 10 nucleotides HP15_2609 and HP15_2610 are separated by 275 nucleotides
HP15_2607: HP15_2607 - BNR repeat glycosyl hydrolase-like protein, at 2,759,326 to 2,760,303
_2607
HP15_2608: HP15_2608 - hydroxymethylglutaryl-CoA lyase, at 2,760,305 to 2,761,228
_2608
HP15_2609: HP15_2609 - acyl-CoA transferase/carnitine dehydratase, at 2,761,239 to 2,762,435
_2609
HP15_2610: HP15_2610 - D-amino acid dehydrogenase small subunit, at 2,762,711 to 2,763,994
_2610
Position (kb)
2761
2762
2763 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2760.245 kb on + strand at 2760.258 kb on - strand at 2760.324 kb on + strand at 2760.337 kb on - strand at 2760.454 kb on - strand, within HP15_2608 at 2760.482 kb on - strand, within HP15_2608 at 2760.662 kb on + strand, within HP15_2608 at 2760.670 kb on - strand, within HP15_2608 at 2760.670 kb on - strand, within HP15_2608 at 2760.677 kb on + strand, within HP15_2608 at 2760.737 kb on - strand, within HP15_2608 at 2760.742 kb on - strand, within HP15_2608 at 2760.837 kb on - strand, within HP15_2608 at 2760.882 kb on - strand, within HP15_2608 at 2760.894 kb on - strand, within HP15_2608 at 2760.952 kb on + strand, within HP15_2608 at 2760.998 kb on + strand, within HP15_2608 at 2761.003 kb on + strand, within HP15_2608 at 2761.006 kb on - strand, within HP15_2608 at 2761.011 kb on - strand, within HP15_2608 at 2761.192 kb on - strand at 2761.243 kb on + strand at 2761.266 kb on - strand at 2761.299 kb on + strand at 2761.342 kb on + strand at 2761.363 kb on + strand, within HP15_2609 at 2761.391 kb on + strand, within HP15_2609 at 2761.415 kb on + strand, within HP15_2609 at 2761.515 kb on - strand, within HP15_2609 at 2761.515 kb on - strand, within HP15_2609 at 2761.517 kb on + strand, within HP15_2609 at 2761.537 kb on - strand, within HP15_2609 at 2761.544 kb on - strand, within HP15_2609 at 2761.551 kb on - strand, within HP15_2609 at 2761.551 kb on - strand, within HP15_2609 at 2761.566 kb on - strand, within HP15_2609 at 2761.606 kb on + strand, within HP15_2609 at 2761.647 kb on - strand, within HP15_2609 at 2761.710 kb on + strand, within HP15_2609 at 2761.862 kb on - strand, within HP15_2609 at 2761.929 kb on + strand, within HP15_2609 at 2761.937 kb on - strand, within HP15_2609 at 2762.107 kb on + strand, within HP15_2609 at 2762.107 kb on + strand, within HP15_2609 at 2762.115 kb on - strand, within HP15_2609 at 2762.171 kb on + strand, within HP15_2609 at 2762.184 kb on + strand, within HP15_2609 at 2762.314 kb on + strand, within HP15_2609 at 2762.387 kb on + strand at 2762.450 kb on + strand at 2762.858 kb on + strand, within HP15_2610 at 2762.959 kb on - strand, within HP15_2610 at 2763.045 kb on + strand, within HP15_2610 at 2763.128 kb on + strand, within HP15_2610 at 2763.136 kb on - strand, within HP15_2610 at 2763.188 kb on - strand, within HP15_2610 at 2763.330 kb on + strand, within HP15_2610 at 2763.347 kb on + strand, within HP15_2610 at 2763.355 kb on - strand, within HP15_2610 at 2763.359 kb on + strand, within HP15_2610 at 2763.389 kb on + strand, within HP15_2610 at 2763.389 kb on + strand, within HP15_2610 at 2763.390 kb on - strand, within HP15_2610
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 2,760,245 + -0.2 2,760,258 - +1.7 2,760,324 + -1.3 2,760,337 - -0.5 2,760,454 - HP15_2608 0.16 -1.5 2,760,482 - HP15_2608 0.19 +0.8 2,760,662 + HP15_2608 0.39 +1.5 2,760,670 - HP15_2608 0.40 -1.9 2,760,670 - HP15_2608 0.40 +0.0 2,760,677 + HP15_2608 0.40 -1.1 2,760,737 - HP15_2608 0.47 -0.8 2,760,742 - HP15_2608 0.47 -1.4 2,760,837 - HP15_2608 0.58 -1.0 2,760,882 - HP15_2608 0.62 +1.0 2,760,894 - HP15_2608 0.64 +0.0 2,760,952 + HP15_2608 0.70 +0.5 2,760,998 + HP15_2608 0.75 +2.0 2,761,003 + HP15_2608 0.76 -0.8 2,761,006 - HP15_2608 0.76 -1.2 2,761,011 - HP15_2608 0.76 -0.5 2,761,192 - +1.3 2,761,243 + -1.5 2,761,266 - -1.1 2,761,299 + +1.4 2,761,342 + +0.5 2,761,363 + HP15_2609 0.10 +2.1 2,761,391 + HP15_2609 0.13 -0.6 2,761,415 + HP15_2609 0.15 -2.0 2,761,515 - HP15_2609 0.23 -0.3 2,761,515 - HP15_2609 0.23 -0.8 2,761,517 + HP15_2609 0.23 +1.5 2,761,537 - HP15_2609 0.25 -1.0 2,761,544 - HP15_2609 0.25 +2.6 2,761,551 - HP15_2609 0.26 -1.4 2,761,551 - HP15_2609 0.26 -0.5 2,761,566 - HP15_2609 0.27 +1.7 2,761,606 + HP15_2609 0.31 -0.5 2,761,647 - HP15_2609 0.34 +0.9 2,761,710 + HP15_2609 0.39 -0.3 2,761,862 - HP15_2609 0.52 -0.2 2,761,929 + HP15_2609 0.58 +1.0 2,761,937 - HP15_2609 0.58 -0.0 2,762,107 + HP15_2609 0.73 -1.4 2,762,107 + HP15_2609 0.73 -0.0 2,762,115 - HP15_2609 0.73 -1.0 2,762,171 + HP15_2609 0.78 +1.5 2,762,184 + HP15_2609 0.79 -0.1 2,762,314 + HP15_2609 0.90 -0.5 2,762,387 + +2.3 2,762,450 + +0.0 2,762,858 + HP15_2610 0.11 -0.7 2,762,959 - HP15_2610 0.19 +2.4 2,763,045 + HP15_2610 0.26 -0.1 2,763,128 + HP15_2610 0.32 -0.5 2,763,136 - HP15_2610 0.33 +0.1 2,763,188 - HP15_2610 0.37 +1.5 2,763,330 + HP15_2610 0.48 +1.3 2,763,347 + HP15_2610 0.50 +0.2 2,763,355 - HP15_2610 0.50 -0.4 2,763,359 + HP15_2610 0.50 +0.9 2,763,389 + HP15_2610 0.53 -0.2 2,763,389 + HP15_2610 0.53 -1.3 2,763,390 - HP15_2610 0.53 +0.1
Or see this region's nucleotide sequence