Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2354 and HP15_2355 are separated by 4 nucleotides HP15_2355 and HP15_2356 overlap by 10 nucleotides HP15_2356 and HP15_2357 are separated by 1 nucleotides
HP15_2354: HP15_2354 - peptidase M48, Ste24p, at 2,478,169 to 2,480,166
_2354
HP15_2355: HP15_2355 - type II and III secretion system protein, at 2,480,171 to 2,482,162
_2355
HP15_2356: HP15_2356 - general secretion pathway protein C, at 2,482,153 to 2,483,004
_2356
HP15_2357: HP15_2357 - conserved hypothetical protein, at 2,483,006 to 2,483,797
_2357
Position (kb)
2480
2481
2482
2483 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2479.178 kb on - strand, within HP15_2354 at 2479.178 kb on - strand, within HP15_2354 at 2479.182 kb on - strand, within HP15_2354 at 2479.237 kb on - strand, within HP15_2354 at 2479.237 kb on - strand, within HP15_2354 at 2479.385 kb on - strand, within HP15_2354 at 2479.456 kb on + strand, within HP15_2354 at 2479.467 kb on + strand, within HP15_2354 at 2479.467 kb on + strand, within HP15_2354 at 2479.498 kb on - strand, within HP15_2354 at 2479.543 kb on - strand, within HP15_2354 at 2479.569 kb on - strand, within HP15_2354 at 2479.639 kb on + strand, within HP15_2354 at 2479.655 kb on + strand, within HP15_2354 at 2479.655 kb on + strand, within HP15_2354 at 2479.840 kb on + strand, within HP15_2354 at 2479.858 kb on + strand, within HP15_2354 at 2479.955 kb on + strand, within HP15_2354 at 2480.010 kb on - strand at 2480.021 kb on + strand at 2480.021 kb on + strand at 2480.050 kb on + strand at 2480.057 kb on + strand at 2480.250 kb on + strand at 2480.626 kb on + strand, within HP15_2355 at 2480.634 kb on - strand, within HP15_2355 at 2480.710 kb on + strand, within HP15_2355 at 2480.713 kb on - strand, within HP15_2355 at 2480.732 kb on - strand, within HP15_2355 at 2480.767 kb on + strand, within HP15_2355 at 2480.767 kb on + strand, within HP15_2355 at 2480.808 kb on + strand, within HP15_2355 at 2480.866 kb on - strand, within HP15_2355 at 2481.021 kb on + strand, within HP15_2355 at 2481.266 kb on - strand, within HP15_2355 at 2481.277 kb on + strand, within HP15_2355 at 2481.403 kb on + strand, within HP15_2355 at 2481.533 kb on - strand, within HP15_2355 at 2481.705 kb on - strand, within HP15_2355 at 2481.798 kb on - strand, within HP15_2355 at 2481.813 kb on + strand, within HP15_2355 at 2481.813 kb on + strand, within HP15_2355 at 2481.821 kb on - strand, within HP15_2355 at 2481.896 kb on + strand, within HP15_2355 at 2481.929 kb on + strand, within HP15_2355 at 2482.017 kb on - strand at 2482.098 kb on + strand at 2482.223 kb on + strand at 2482.264 kb on - strand, within HP15_2356 at 2482.331 kb on + strand, within HP15_2356 at 2482.331 kb on + strand, within HP15_2356 at 2482.400 kb on - strand, within HP15_2356 at 2482.499 kb on + strand, within HP15_2356 at 2482.529 kb on + strand, within HP15_2356 at 2482.617 kb on + strand, within HP15_2356 at 2482.861 kb on + strand, within HP15_2356 at 2482.988 kb on + strand at 2483.081 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 2,479,178 - HP15_2354 0.51 -0.4 2,479,178 - HP15_2354 0.51 +0.2 2,479,182 - HP15_2354 0.51 -1.3 2,479,237 - HP15_2354 0.53 +0.1 2,479,237 - HP15_2354 0.53 +1.5 2,479,385 - HP15_2354 0.61 -0.5 2,479,456 + HP15_2354 0.64 -0.7 2,479,467 + HP15_2354 0.65 +0.0 2,479,467 + HP15_2354 0.65 -1.2 2,479,498 - HP15_2354 0.67 -0.0 2,479,543 - HP15_2354 0.69 -1.3 2,479,569 - HP15_2354 0.70 -1.1 2,479,639 + HP15_2354 0.74 -0.7 2,479,655 + HP15_2354 0.74 +1.6 2,479,655 + HP15_2354 0.74 +1.2 2,479,840 + HP15_2354 0.84 -0.2 2,479,858 + HP15_2354 0.85 +1.5 2,479,955 + HP15_2354 0.89 +1.1 2,480,010 - -0.5 2,480,021 + -0.5 2,480,021 + +2.3 2,480,050 + +1.6 2,480,057 + +0.9 2,480,250 + -0.2 2,480,626 + HP15_2355 0.23 +1.1 2,480,634 - HP15_2355 0.23 +3.9 2,480,710 + HP15_2355 0.27 +1.1 2,480,713 - HP15_2355 0.27 -1.1 2,480,732 - HP15_2355 0.28 +0.7 2,480,767 + HP15_2355 0.30 -0.2 2,480,767 + HP15_2355 0.30 +2.8 2,480,808 + HP15_2355 0.32 +2.6 2,480,866 - HP15_2355 0.35 +1.6 2,481,021 + HP15_2355 0.43 -1.8 2,481,266 - HP15_2355 0.55 +2.2 2,481,277 + HP15_2355 0.56 -0.7 2,481,403 + HP15_2355 0.62 +1.8 2,481,533 - HP15_2355 0.68 -0.2 2,481,705 - HP15_2355 0.77 +0.3 2,481,798 - HP15_2355 0.82 +2.3 2,481,813 + HP15_2355 0.82 -0.7 2,481,813 + HP15_2355 0.82 -0.3 2,481,821 - HP15_2355 0.83 -0.6 2,481,896 + HP15_2355 0.87 -0.6 2,481,929 + HP15_2355 0.88 +3.6 2,482,017 - +2.1 2,482,098 + +0.9 2,482,223 + +0.8 2,482,264 - HP15_2356 0.13 -0.1 2,482,331 + HP15_2356 0.21 +2.8 2,482,331 + HP15_2356 0.21 +0.6 2,482,400 - HP15_2356 0.29 -1.1 2,482,499 + HP15_2356 0.41 -2.0 2,482,529 + HP15_2356 0.44 +2.4 2,482,617 + HP15_2356 0.54 +2.1 2,482,861 + HP15_2356 0.83 +2.6 2,482,988 + +0.8 2,483,081 - -1.6
Or see this region's nucleotide sequence