Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2342 and HP15_2343 are separated by 43 nucleotides HP15_2343 and HP15_tRNA44 are separated by 53 nucleotides HP15_tRNA44 and HP15_2344 are separated by 99 nucleotides
HP15_2342: HP15_2342 - conserved hypothetical protein, membrane, at 2,463,977 to 2,464,984
_2342
HP15_2343: HP15_2343 - amidase signature enzyme, at 2,465,028 to 2,466,515
_2343
HP15_tRNA44: HP15_tRNA44 - tRNA-Met, at 2,466,569 to 2,466,645
_tRNA44
HP15_2344: HP15_2344 - acetyl-CoA acetyltransferase, at 2,466,745 to 2,468,088
_2344
Position (kb)
2465
2466
2467 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2464.094 kb on + strand, within HP15_2342 at 2464.110 kb on - strand, within HP15_2342 at 2464.267 kb on - strand, within HP15_2342 at 2464.304 kb on - strand, within HP15_2342 at 2464.317 kb on - strand, within HP15_2342 at 2464.408 kb on + strand, within HP15_2342 at 2464.470 kb on + strand, within HP15_2342 at 2464.494 kb on - strand, within HP15_2342 at 2464.746 kb on + strand, within HP15_2342 at 2464.746 kb on + strand, within HP15_2342 at 2464.814 kb on + strand, within HP15_2342 at 2464.869 kb on + strand, within HP15_2342 at 2464.897 kb on - strand at 2464.913 kb on - strand at 2464.948 kb on + strand at 2464.961 kb on - strand at 2465.064 kb on + strand at 2465.072 kb on - strand at 2465.097 kb on + strand at 2465.169 kb on + strand at 2465.193 kb on + strand, within HP15_2343 at 2465.193 kb on + strand, within HP15_2343 at 2465.260 kb on + strand, within HP15_2343 at 2465.260 kb on + strand, within HP15_2343 at 2465.267 kb on - strand, within HP15_2343 at 2465.268 kb on - strand, within HP15_2343 at 2465.272 kb on + strand, within HP15_2343 at 2465.303 kb on + strand, within HP15_2343 at 2465.320 kb on + strand, within HP15_2343 at 2465.325 kb on + strand, within HP15_2343 at 2465.333 kb on - strand, within HP15_2343 at 2465.333 kb on - strand, within HP15_2343 at 2465.542 kb on - strand, within HP15_2343 at 2465.594 kb on + strand, within HP15_2343 at 2465.594 kb on + strand, within HP15_2343 at 2465.800 kb on + strand, within HP15_2343 at 2465.805 kb on + strand, within HP15_2343 at 2465.805 kb on + strand, within HP15_2343 at 2465.887 kb on - strand, within HP15_2343 at 2465.921 kb on + strand, within HP15_2343 at 2465.967 kb on - strand, within HP15_2343 at 2465.969 kb on + strand, within HP15_2343 at 2466.005 kb on + strand, within HP15_2343 at 2466.005 kb on + strand, within HP15_2343 at 2466.013 kb on + strand, within HP15_2343 at 2466.013 kb on - strand, within HP15_2343 at 2466.013 kb on - strand, within HP15_2343 at 2466.302 kb on + strand, within HP15_2343 at 2466.310 kb on - strand, within HP15_2343 at 2466.318 kb on + strand, within HP15_2343 at 2466.440 kb on - strand at 2466.465 kb on + strand at 2466.509 kb on - strand at 2466.633 kb on + strand, within HP15_tRNA44 at 2466.641 kb on - strand at 2466.641 kb on - strand at 2466.641 kb on - strand at 2466.670 kb on + strand at 2466.713 kb on - strand at 2466.921 kb on + strand, within HP15_2344 at 2466.931 kb on + strand, within HP15_2344 at 2466.943 kb on + strand, within HP15_2344 at 2466.970 kb on + strand, within HP15_2344 at 2466.978 kb on + strand, within HP15_2344 at 2466.980 kb on + strand, within HP15_2344 at 2466.995 kb on - strand, within HP15_2344 at 2466.997 kb on + strand, within HP15_2344 at 2466.997 kb on + strand, within HP15_2344 at 2467.091 kb on - strand, within HP15_2344 at 2467.096 kb on - strand, within HP15_2344 at 2467.165 kb on + strand, within HP15_2344 at 2467.384 kb on + strand, within HP15_2344 at 2467.435 kb on + strand, within HP15_2344 at 2467.472 kb on - strand, within HP15_2344 at 2467.487 kb on - strand, within HP15_2344
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 2,464,094 + HP15_2342 0.12 -2.0 2,464,110 - HP15_2342 0.13 +0.8 2,464,267 - HP15_2342 0.29 +0.6 2,464,304 - HP15_2342 0.32 +0.3 2,464,317 - HP15_2342 0.34 -1.5 2,464,408 + HP15_2342 0.43 +1.4 2,464,470 + HP15_2342 0.49 -0.2 2,464,494 - HP15_2342 0.51 -1.4 2,464,746 + HP15_2342 0.76 -0.8 2,464,746 + HP15_2342 0.76 +0.3 2,464,814 + HP15_2342 0.83 +1.6 2,464,869 + HP15_2342 0.88 -0.2 2,464,897 - -0.9 2,464,913 - +1.7 2,464,948 + +1.3 2,464,961 - +0.8 2,465,064 + -0.6 2,465,072 - -0.6 2,465,097 + -0.1 2,465,169 + -1.7 2,465,193 + HP15_2343 0.11 +1.7 2,465,193 + HP15_2343 0.11 -0.6 2,465,260 + HP15_2343 0.16 +0.2 2,465,260 + HP15_2343 0.16 +0.8 2,465,267 - HP15_2343 0.16 -0.6 2,465,268 - HP15_2343 0.16 +0.8 2,465,272 + HP15_2343 0.16 -1.0 2,465,303 + HP15_2343 0.18 +0.1 2,465,320 + HP15_2343 0.20 -2.8 2,465,325 + HP15_2343 0.20 -1.3 2,465,333 - HP15_2343 0.20 +1.2 2,465,333 - HP15_2343 0.20 -0.7 2,465,542 - HP15_2343 0.35 -0.1 2,465,594 + HP15_2343 0.38 +1.3 2,465,594 + HP15_2343 0.38 -0.6 2,465,800 + HP15_2343 0.52 +1.5 2,465,805 + HP15_2343 0.52 -0.8 2,465,805 + HP15_2343 0.52 -0.6 2,465,887 - HP15_2343 0.58 -0.6 2,465,921 + HP15_2343 0.60 -1.2 2,465,967 - HP15_2343 0.63 +1.1 2,465,969 + HP15_2343 0.63 -0.2 2,466,005 + HP15_2343 0.66 -1.2 2,466,005 + HP15_2343 0.66 +2.2 2,466,013 + HP15_2343 0.66 -1.7 2,466,013 - HP15_2343 0.66 -0.0 2,466,013 - HP15_2343 0.66 -0.5 2,466,302 + HP15_2343 0.86 +1.1 2,466,310 - HP15_2343 0.86 -1.6 2,466,318 + HP15_2343 0.87 -1.2 2,466,440 - -0.4 2,466,465 + +1.4 2,466,509 - +0.6 2,466,633 + HP15_tRNA44 0.83 +0.0 2,466,641 - +1.2 2,466,641 - +1.8 2,466,641 - -0.2 2,466,670 + +1.4 2,466,713 - +1.2 2,466,921 + HP15_2344 0.13 +1.3 2,466,931 + HP15_2344 0.14 +1.2 2,466,943 + HP15_2344 0.15 -0.4 2,466,970 + HP15_2344 0.17 -0.2 2,466,978 + HP15_2344 0.17 -0.6 2,466,980 + HP15_2344 0.17 -0.8 2,466,995 - HP15_2344 0.19 +1.0 2,466,997 + HP15_2344 0.19 +0.1 2,466,997 + HP15_2344 0.19 +0.6 2,467,091 - HP15_2344 0.26 +1.5 2,467,096 - HP15_2344 0.26 +1.4 2,467,165 + HP15_2344 0.31 -2.2 2,467,384 + HP15_2344 0.48 +0.9 2,467,435 + HP15_2344 0.51 +0.3 2,467,472 - HP15_2344 0.54 +1.3 2,467,487 - HP15_2344 0.55 -1.5
Or see this region's nucleotide sequence