Strain Fitness in Marinobacter adhaerens HP15 around HP15_2343

Experiment: DinoMM minimal media with L-Arginine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2342 and HP15_2343 are separated by 43 nucleotidesHP15_2343 and HP15_tRNA44 are separated by 53 nucleotidesHP15_tRNA44 and HP15_2344 are separated by 99 nucleotides HP15_2342: HP15_2342 - conserved hypothetical protein, membrane, at 2,463,977 to 2,464,984 _2342 HP15_2343: HP15_2343 - amidase signature enzyme, at 2,465,028 to 2,466,515 _2343 HP15_tRNA44: HP15_tRNA44 - tRNA-Met, at 2,466,569 to 2,466,645 _tRNA44 HP15_2344: HP15_2344 - acetyl-CoA acetyltransferase, at 2,466,745 to 2,468,088 _2344 Position (kb) 2465 2466 2467Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2464.094 kb on + strand, within HP15_2342at 2464.110 kb on - strand, within HP15_2342at 2464.267 kb on - strand, within HP15_2342at 2464.304 kb on - strand, within HP15_2342at 2464.317 kb on - strand, within HP15_2342at 2464.408 kb on + strand, within HP15_2342at 2464.470 kb on + strand, within HP15_2342at 2464.494 kb on - strand, within HP15_2342at 2464.746 kb on + strand, within HP15_2342at 2464.746 kb on + strand, within HP15_2342at 2464.814 kb on + strand, within HP15_2342at 2464.869 kb on + strand, within HP15_2342at 2464.897 kb on - strandat 2464.913 kb on - strandat 2464.948 kb on + strandat 2464.961 kb on - strandat 2465.064 kb on + strandat 2465.072 kb on - strandat 2465.097 kb on + strandat 2465.169 kb on + strandat 2465.193 kb on + strand, within HP15_2343at 2465.193 kb on + strand, within HP15_2343at 2465.260 kb on + strand, within HP15_2343at 2465.260 kb on + strand, within HP15_2343at 2465.267 kb on - strand, within HP15_2343at 2465.268 kb on - strand, within HP15_2343at 2465.272 kb on + strand, within HP15_2343at 2465.303 kb on + strand, within HP15_2343at 2465.320 kb on + strand, within HP15_2343at 2465.325 kb on + strand, within HP15_2343at 2465.333 kb on - strand, within HP15_2343at 2465.333 kb on - strand, within HP15_2343at 2465.542 kb on - strand, within HP15_2343at 2465.594 kb on + strand, within HP15_2343at 2465.594 kb on + strand, within HP15_2343at 2465.800 kb on + strand, within HP15_2343at 2465.805 kb on + strand, within HP15_2343at 2465.805 kb on + strand, within HP15_2343at 2465.887 kb on - strand, within HP15_2343at 2465.921 kb on + strand, within HP15_2343at 2465.967 kb on - strand, within HP15_2343at 2465.969 kb on + strand, within HP15_2343at 2466.005 kb on + strand, within HP15_2343at 2466.005 kb on + strand, within HP15_2343at 2466.013 kb on + strand, within HP15_2343at 2466.013 kb on - strand, within HP15_2343at 2466.013 kb on - strand, within HP15_2343at 2466.302 kb on + strand, within HP15_2343at 2466.310 kb on - strand, within HP15_2343at 2466.318 kb on + strand, within HP15_2343at 2466.440 kb on - strandat 2466.465 kb on + strandat 2466.509 kb on - strandat 2466.633 kb on + strand, within HP15_tRNA44at 2466.641 kb on - strandat 2466.641 kb on - strandat 2466.641 kb on - strandat 2466.670 kb on + strandat 2466.713 kb on - strandat 2466.921 kb on + strand, within HP15_2344at 2466.931 kb on + strand, within HP15_2344at 2466.943 kb on + strand, within HP15_2344at 2466.970 kb on + strand, within HP15_2344at 2466.978 kb on + strand, within HP15_2344at 2466.980 kb on + strand, within HP15_2344at 2466.995 kb on - strand, within HP15_2344at 2466.997 kb on + strand, within HP15_2344at 2466.997 kb on + strand, within HP15_2344at 2467.091 kb on - strand, within HP15_2344at 2467.096 kb on - strand, within HP15_2344at 2467.165 kb on + strand, within HP15_2344at 2467.384 kb on + strand, within HP15_2344at 2467.435 kb on + strand, within HP15_2344at 2467.472 kb on - strand, within HP15_2344at 2467.487 kb on - strand, within HP15_2344

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
remove
2,464,094 + HP15_2342 0.12 -2.0
2,464,110 - HP15_2342 0.13 +0.8
2,464,267 - HP15_2342 0.29 +0.6
2,464,304 - HP15_2342 0.32 +0.3
2,464,317 - HP15_2342 0.34 -1.5
2,464,408 + HP15_2342 0.43 +1.4
2,464,470 + HP15_2342 0.49 -0.2
2,464,494 - HP15_2342 0.51 -1.4
2,464,746 + HP15_2342 0.76 -0.8
2,464,746 + HP15_2342 0.76 +0.3
2,464,814 + HP15_2342 0.83 +1.6
2,464,869 + HP15_2342 0.88 -0.2
2,464,897 - -0.9
2,464,913 - +1.7
2,464,948 + +1.3
2,464,961 - +0.8
2,465,064 + -0.6
2,465,072 - -0.6
2,465,097 + -0.1
2,465,169 + -1.7
2,465,193 + HP15_2343 0.11 +1.7
2,465,193 + HP15_2343 0.11 -0.6
2,465,260 + HP15_2343 0.16 +0.2
2,465,260 + HP15_2343 0.16 +0.8
2,465,267 - HP15_2343 0.16 -0.6
2,465,268 - HP15_2343 0.16 +0.8
2,465,272 + HP15_2343 0.16 -1.0
2,465,303 + HP15_2343 0.18 +0.1
2,465,320 + HP15_2343 0.20 -2.8
2,465,325 + HP15_2343 0.20 -1.3
2,465,333 - HP15_2343 0.20 +1.2
2,465,333 - HP15_2343 0.20 -0.7
2,465,542 - HP15_2343 0.35 -0.1
2,465,594 + HP15_2343 0.38 +1.3
2,465,594 + HP15_2343 0.38 -0.6
2,465,800 + HP15_2343 0.52 +1.5
2,465,805 + HP15_2343 0.52 -0.8
2,465,805 + HP15_2343 0.52 -0.6
2,465,887 - HP15_2343 0.58 -0.6
2,465,921 + HP15_2343 0.60 -1.2
2,465,967 - HP15_2343 0.63 +1.1
2,465,969 + HP15_2343 0.63 -0.2
2,466,005 + HP15_2343 0.66 -1.2
2,466,005 + HP15_2343 0.66 +2.2
2,466,013 + HP15_2343 0.66 -1.7
2,466,013 - HP15_2343 0.66 -0.0
2,466,013 - HP15_2343 0.66 -0.5
2,466,302 + HP15_2343 0.86 +1.1
2,466,310 - HP15_2343 0.86 -1.6
2,466,318 + HP15_2343 0.87 -1.2
2,466,440 - -0.4
2,466,465 + +1.4
2,466,509 - +0.6
2,466,633 + HP15_tRNA44 0.83 +0.0
2,466,641 - +1.2
2,466,641 - +1.8
2,466,641 - -0.2
2,466,670 + +1.4
2,466,713 - +1.2
2,466,921 + HP15_2344 0.13 +1.3
2,466,931 + HP15_2344 0.14 +1.2
2,466,943 + HP15_2344 0.15 -0.4
2,466,970 + HP15_2344 0.17 -0.2
2,466,978 + HP15_2344 0.17 -0.6
2,466,980 + HP15_2344 0.17 -0.8
2,466,995 - HP15_2344 0.19 +1.0
2,466,997 + HP15_2344 0.19 +0.1
2,466,997 + HP15_2344 0.19 +0.6
2,467,091 - HP15_2344 0.26 +1.5
2,467,096 - HP15_2344 0.26 +1.4
2,467,165 + HP15_2344 0.31 -2.2
2,467,384 + HP15_2344 0.48 +0.9
2,467,435 + HP15_2344 0.51 +0.3
2,467,472 - HP15_2344 0.54 +1.3
2,467,487 - HP15_2344 0.55 -1.5

Or see this region's nucleotide sequence