Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2129 and HP15_2130 are separated by 8 nucleotides HP15_2130 and HP15_2131 are separated by 137 nucleotides HP15_2131 and HP15_2132 are separated by 9 nucleotides HP15_2132 and HP15_2133 are separated by 99 nucleotides
HP15_2129: HP15_2129 - ABC transporter ATP-binding protein-like protein, at 2,231,273 to 2,232,004
_2129
HP15_2130: HP15_2130 - transcriptional regulator, TraR/DksA family, at 2,232,013 to 2,232,333
_2130
HP15_2131: HP15_2131 - ATP-dependent protease HslVU (ClpYQ), ATPase subunit-like protein, at 2,232,471 to 2,232,809
_2131
HP15_2132: HP15_2132 - polyhydroxyalkanoic acid synthase, at 2,232,819 to 2,234,621
_2132
HP15_2133: HP15_2133 - solute symporter-like protein, at 2,234,721 to 2,236,085
_2133
Position (kb)
2232
2233
2234
2235 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2231.830 kb on - strand, within HP15_2129 at 2231.915 kb on + strand, within HP15_2129 at 2231.963 kb on + strand at 2232.016 kb on + strand at 2232.016 kb on + strand at 2232.018 kb on + strand at 2232.028 kb on - strand at 2232.080 kb on - strand, within HP15_2130 at 2232.107 kb on + strand, within HP15_2130 at 2232.394 kb on + strand at 2232.433 kb on - strand at 2232.473 kb on - strand at 2232.597 kb on - strand, within HP15_2131 at 2232.597 kb on - strand, within HP15_2131 at 2232.667 kb on - strand, within HP15_2131 at 2232.708 kb on + strand, within HP15_2131 at 2232.765 kb on + strand, within HP15_2131 at 2232.779 kb on + strand at 2232.780 kb on + strand at 2232.787 kb on - strand at 2232.787 kb on - strand at 2232.787 kb on - strand at 2232.819 kb on - strand at 2232.830 kb on + strand at 2232.950 kb on + strand at 2232.950 kb on + strand at 2233.067 kb on + strand, within HP15_2132 at 2233.215 kb on + strand, within HP15_2132 at 2233.251 kb on - strand, within HP15_2132 at 2233.287 kb on + strand, within HP15_2132 at 2233.287 kb on + strand, within HP15_2132 at 2233.348 kb on - strand, within HP15_2132 at 2233.605 kb on + strand, within HP15_2132 at 2233.606 kb on - strand, within HP15_2132 at 2233.838 kb on + strand, within HP15_2132 at 2233.921 kb on - strand, within HP15_2132 at 2234.007 kb on + strand, within HP15_2132 at 2234.015 kb on - strand, within HP15_2132 at 2234.149 kb on + strand, within HP15_2132 at 2234.208 kb on - strand, within HP15_2132 at 2234.221 kb on + strand, within HP15_2132 at 2234.269 kb on + strand, within HP15_2132 at 2234.315 kb on + strand, within HP15_2132 at 2234.443 kb on + strand at 2234.599 kb on - strand at 2234.616 kb on + strand at 2234.895 kb on - strand, within HP15_2133 at 2235.053 kb on + strand, within HP15_2133 at 2235.212 kb on + strand, within HP15_2133 at 2235.559 kb on + strand, within HP15_2133 at 2235.572 kb on - strand, within HP15_2133 at 2235.607 kb on - strand, within HP15_2133
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 2,231,830 - HP15_2129 0.76 +0.2 2,231,915 + HP15_2129 0.88 -0.3 2,231,963 + +1.0 2,232,016 + -0.2 2,232,016 + -0.7 2,232,018 + +2.2 2,232,028 - -0.3 2,232,080 - HP15_2130 0.21 +1.1 2,232,107 + HP15_2130 0.29 +1.2 2,232,394 + +0.5 2,232,433 - -0.7 2,232,473 - +1.6 2,232,597 - HP15_2131 0.37 -0.4 2,232,597 - HP15_2131 0.37 +0.4 2,232,667 - HP15_2131 0.58 +1.2 2,232,708 + HP15_2131 0.70 +0.3 2,232,765 + HP15_2131 0.87 +1.5 2,232,779 + -1.0 2,232,780 + +1.0 2,232,787 - -0.7 2,232,787 - +0.4 2,232,787 - -1.2 2,232,819 - +0.0 2,232,830 + +1.8 2,232,950 + +1.1 2,232,950 + +0.6 2,233,067 + HP15_2132 0.14 +1.3 2,233,215 + HP15_2132 0.22 -0.9 2,233,251 - HP15_2132 0.24 -0.7 2,233,287 + HP15_2132 0.26 +0.4 2,233,287 + HP15_2132 0.26 -0.2 2,233,348 - HP15_2132 0.29 +0.2 2,233,605 + HP15_2132 0.44 -1.5 2,233,606 - HP15_2132 0.44 +1.5 2,233,838 + HP15_2132 0.57 -1.1 2,233,921 - HP15_2132 0.61 -1.1 2,234,007 + HP15_2132 0.66 -0.6 2,234,015 - HP15_2132 0.66 -0.8 2,234,149 + HP15_2132 0.74 +1.5 2,234,208 - HP15_2132 0.77 -0.6 2,234,221 + HP15_2132 0.78 +3.0 2,234,269 + HP15_2132 0.80 -0.8 2,234,315 + HP15_2132 0.83 -0.0 2,234,443 + +0.3 2,234,599 - +0.5 2,234,616 + +2.1 2,234,895 - HP15_2133 0.13 -2.6 2,235,053 + HP15_2133 0.24 +3.4 2,235,212 + HP15_2133 0.36 -0.4 2,235,559 + HP15_2133 0.61 -0.6 2,235,572 - HP15_2133 0.62 +0.2 2,235,607 - HP15_2133 0.65 -0.9
Or see this region's nucleotide sequence