Strain Fitness in Marinobacter adhaerens HP15 around HP15_1985

Experiment: DinoMM minimal media with L-Arginine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1983 and HP15_1984 are separated by 92 nucleotidesHP15_1984 and HP15_1985 overlap by 4 nucleotidesHP15_1985 and HP15_1986 overlap by 1 nucleotidesHP15_1986 and HP15_1987 are separated by 170 nucleotidesHP15_1987 and HP15_1988 overlap by 2 nucleotidesHP15_1988 and HP15_1989 overlap by 4 nucleotides HP15_1983: HP15_1983 - hypothetical protein, at 2,096,907 to 2,097,542 _1983 HP15_1984: HP15_1984 - hypothetical protein, at 2,097,635 to 2,098,078 _1984 HP15_1985: HP15_1985 - protein containing phage antirepressor protein domain, at 2,098,075 to 2,098,377 _1985 HP15_1986: HP15_1986 - hypothetical protein, at 2,098,377 to 2,098,625 _1986 HP15_1987: HP15_1987 - hypothetical protein, at 2,098,796 to 2,098,936 _1987 HP15_1988: HP15_1988 - hypothetical protein, at 2,098,935 to 2,099,276 _1988 HP15_1989: HP15_1989 - hypothetical protein, at 2,099,273 to 2,099,584 _1989 Position (kb) 2098 2099Strain fitness (log2 ratio) -2 -1 0 1 2at 2097.080 kb on + strand, within HP15_1983at 2097.148 kb on + strand, within HP15_1983at 2097.174 kb on + strand, within HP15_1983at 2097.315 kb on - strand, within HP15_1983at 2097.396 kb on + strand, within HP15_1983at 2097.422 kb on + strand, within HP15_1983at 2097.463 kb on + strand, within HP15_1983at 2097.493 kb on + strandat 2097.867 kb on - strand, within HP15_1984at 2098.066 kb on - strandat 2098.076 kb on - strandat 2098.236 kb on - strand, within HP15_1985at 2098.271 kb on - strand, within HP15_1985at 2098.302 kb on - strand, within HP15_1985at 2098.317 kb on - strand, within HP15_1985at 2098.317 kb on - strand, within HP15_1985at 2098.418 kb on - strand, within HP15_1986at 2098.802 kb on - strandat 2098.807 kb on - strandat 2098.863 kb on - strand, within HP15_1987at 2099.046 kb on + strand, within HP15_1988at 2099.046 kb on + strand, within HP15_1988at 2099.054 kb on - strand, within HP15_1988at 2099.056 kb on + strand, within HP15_1988at 2099.091 kb on + strand, within HP15_1988at 2099.106 kb on + strand, within HP15_1988at 2099.109 kb on - strand, within HP15_1988at 2099.109 kb on - strand, within HP15_1988at 2099.114 kb on - strand, within HP15_1988at 2099.124 kb on - strand, within HP15_1988at 2099.138 kb on - strand, within HP15_1988at 2099.138 kb on - strand, within HP15_1988at 2099.226 kb on - strand, within HP15_1988at 2099.232 kb on - strand, within HP15_1988at 2099.241 kb on - strand, within HP15_1988at 2099.270 kb on - strandat 2099.278 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
remove
2,097,080 + HP15_1983 0.27 -0.9
2,097,148 + HP15_1983 0.38 +1.9
2,097,174 + HP15_1983 0.42 -1.1
2,097,315 - HP15_1983 0.64 +1.3
2,097,396 + HP15_1983 0.77 -0.6
2,097,422 + HP15_1983 0.81 +1.4
2,097,463 + HP15_1983 0.87 -0.4
2,097,493 + +1.1
2,097,867 - HP15_1984 0.52 +0.3
2,098,066 - +0.9
2,098,076 - -1.1
2,098,236 - HP15_1985 0.53 -1.3
2,098,271 - HP15_1985 0.65 -1.8
2,098,302 - HP15_1985 0.75 -1.0
2,098,317 - HP15_1985 0.80 -0.8
2,098,317 - HP15_1985 0.80 +0.2
2,098,418 - HP15_1986 0.16 +0.3
2,098,802 - -0.4
2,098,807 - +1.9
2,098,863 - HP15_1987 0.48 +1.3
2,099,046 + HP15_1988 0.32 -0.9
2,099,046 + HP15_1988 0.32 +1.3
2,099,054 - HP15_1988 0.35 -0.4
2,099,056 + HP15_1988 0.35 -0.2
2,099,091 + HP15_1988 0.46 -0.4
2,099,106 + HP15_1988 0.50 +1.9
2,099,109 - HP15_1988 0.51 -0.7
2,099,109 - HP15_1988 0.51 +0.3
2,099,114 - HP15_1988 0.52 +2.0
2,099,124 - HP15_1988 0.55 +0.1
2,099,138 - HP15_1988 0.59 -1.3
2,099,138 - HP15_1988 0.59 +0.2
2,099,226 - HP15_1988 0.85 -0.4
2,099,232 - HP15_1988 0.87 +0.2
2,099,241 - HP15_1988 0.89 -1.9
2,099,270 - +0.2
2,099,278 - -0.8

Or see this region's nucleotide sequence