Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1983 and HP15_1984 are separated by 92 nucleotides HP15_1984 and HP15_1985 overlap by 4 nucleotides HP15_1985 and HP15_1986 overlap by 1 nucleotides HP15_1986 and HP15_1987 are separated by 170 nucleotides HP15_1987 and HP15_1988 overlap by 2 nucleotides HP15_1988 and HP15_1989 overlap by 4 nucleotides
HP15_1983: HP15_1983 - hypothetical protein, at 2,096,907 to 2,097,542
_1983
HP15_1984: HP15_1984 - hypothetical protein, at 2,097,635 to 2,098,078
_1984
HP15_1985: HP15_1985 - protein containing phage antirepressor protein domain, at 2,098,075 to 2,098,377
_1985
HP15_1986: HP15_1986 - hypothetical protein, at 2,098,377 to 2,098,625
_1986
HP15_1987: HP15_1987 - hypothetical protein, at 2,098,796 to 2,098,936
_1987
HP15_1988: HP15_1988 - hypothetical protein, at 2,098,935 to 2,099,276
_1988
HP15_1989: HP15_1989 - hypothetical protein, at 2,099,273 to 2,099,584
_1989
Position (kb)
2098
2099 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2097.080 kb on + strand, within HP15_1983 at 2097.148 kb on + strand, within HP15_1983 at 2097.174 kb on + strand, within HP15_1983 at 2097.315 kb on - strand, within HP15_1983 at 2097.396 kb on + strand, within HP15_1983 at 2097.422 kb on + strand, within HP15_1983 at 2097.463 kb on + strand, within HP15_1983 at 2097.493 kb on + strand at 2097.867 kb on - strand, within HP15_1984 at 2098.066 kb on - strand at 2098.076 kb on - strand at 2098.236 kb on - strand, within HP15_1985 at 2098.271 kb on - strand, within HP15_1985 at 2098.302 kb on - strand, within HP15_1985 at 2098.317 kb on - strand, within HP15_1985 at 2098.317 kb on - strand, within HP15_1985 at 2098.418 kb on - strand, within HP15_1986 at 2098.802 kb on - strand at 2098.807 kb on - strand at 2098.863 kb on - strand, within HP15_1987 at 2099.046 kb on + strand, within HP15_1988 at 2099.046 kb on + strand, within HP15_1988 at 2099.054 kb on - strand, within HP15_1988 at 2099.056 kb on + strand, within HP15_1988 at 2099.091 kb on + strand, within HP15_1988 at 2099.106 kb on + strand, within HP15_1988 at 2099.109 kb on - strand, within HP15_1988 at 2099.109 kb on - strand, within HP15_1988 at 2099.114 kb on - strand, within HP15_1988 at 2099.124 kb on - strand, within HP15_1988 at 2099.138 kb on - strand, within HP15_1988 at 2099.138 kb on - strand, within HP15_1988 at 2099.226 kb on - strand, within HP15_1988 at 2099.232 kb on - strand, within HP15_1988 at 2099.241 kb on - strand, within HP15_1988 at 2099.270 kb on - strand at 2099.278 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 2,097,080 + HP15_1983 0.27 -0.9 2,097,148 + HP15_1983 0.38 +1.9 2,097,174 + HP15_1983 0.42 -1.1 2,097,315 - HP15_1983 0.64 +1.3 2,097,396 + HP15_1983 0.77 -0.6 2,097,422 + HP15_1983 0.81 +1.4 2,097,463 + HP15_1983 0.87 -0.4 2,097,493 + +1.1 2,097,867 - HP15_1984 0.52 +0.3 2,098,066 - +0.9 2,098,076 - -1.1 2,098,236 - HP15_1985 0.53 -1.3 2,098,271 - HP15_1985 0.65 -1.8 2,098,302 - HP15_1985 0.75 -1.0 2,098,317 - HP15_1985 0.80 -0.8 2,098,317 - HP15_1985 0.80 +0.2 2,098,418 - HP15_1986 0.16 +0.3 2,098,802 - -0.4 2,098,807 - +1.9 2,098,863 - HP15_1987 0.48 +1.3 2,099,046 + HP15_1988 0.32 -0.9 2,099,046 + HP15_1988 0.32 +1.3 2,099,054 - HP15_1988 0.35 -0.4 2,099,056 + HP15_1988 0.35 -0.2 2,099,091 + HP15_1988 0.46 -0.4 2,099,106 + HP15_1988 0.50 +1.9 2,099,109 - HP15_1988 0.51 -0.7 2,099,109 - HP15_1988 0.51 +0.3 2,099,114 - HP15_1988 0.52 +2.0 2,099,124 - HP15_1988 0.55 +0.1 2,099,138 - HP15_1988 0.59 -1.3 2,099,138 - HP15_1988 0.59 +0.2 2,099,226 - HP15_1988 0.85 -0.4 2,099,232 - HP15_1988 0.87 +0.2 2,099,241 - HP15_1988 0.89 -1.9 2,099,270 - +0.2 2,099,278 - -0.8
Or see this region's nucleotide sequence