Strain Fitness in Marinobacter adhaerens HP15 around HP15_1906

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1905 and HP15_1906 are separated by 1 nucleotidesHP15_1906 and HP15_1907 are separated by 1 nucleotides HP15_1905: HP15_1905 - conserved hypothetical protein, at 2,014,616 to 2,017,165 _1905 HP15_1906: HP15_1906 - acetyltransferase-like protein, at 2,017,167 to 2,017,787 _1906 HP15_1907: HP15_1907 - coenzyme F390 synthetase-like protein, at 2,017,789 to 2,019,153 _1907 Position (kb) 2017 2018Strain fitness (log2 ratio) -2 -1 0 1 2at 2016.195 kb on + strand, within HP15_1905at 2016.195 kb on + strand, within HP15_1905at 2016.195 kb on + strand, within HP15_1905at 2016.195 kb on + strand, within HP15_1905at 2016.203 kb on - strand, within HP15_1905at 2016.203 kb on - strand, within HP15_1905at 2016.406 kb on + strand, within HP15_1905at 2016.567 kb on + strand, within HP15_1905at 2016.615 kb on - strand, within HP15_1905at 2016.620 kb on - strand, within HP15_1905at 2016.620 kb on - strand, within HP15_1905at 2016.688 kb on - strand, within HP15_1905at 2016.700 kb on - strand, within HP15_1905at 2016.700 kb on - strand, within HP15_1905at 2016.704 kb on + strand, within HP15_1905at 2016.916 kb on - strandat 2017.012 kb on - strandat 2017.040 kb on + strandat 2017.064 kb on - strandat 2017.432 kb on + strand, within HP15_1906at 2017.501 kb on + strand, within HP15_1906at 2017.553 kb on - strand, within HP15_1906at 2017.657 kb on - strand, within HP15_1906at 2017.662 kb on - strand, within HP15_1906at 2017.662 kb on - strand, within HP15_1906at 2017.672 kb on - strand, within HP15_1906at 2017.674 kb on + strand, within HP15_1906at 2017.674 kb on + strand, within HP15_1906at 2017.692 kb on - strand, within HP15_1906at 2017.750 kb on - strandat 2017.843 kb on + strandat 2017.882 kb on - strandat 2017.913 kb on - strandat 2017.940 kb on - strand, within HP15_1907at 2018.110 kb on - strand, within HP15_1907at 2018.130 kb on + strand, within HP15_1907at 2018.191 kb on + strand, within HP15_1907at 2018.191 kb on + strand, within HP15_1907at 2018.191 kb on + strand, within HP15_1907at 2018.196 kb on + strand, within HP15_1907at 2018.196 kb on + strand, within HP15_1907at 2018.340 kb on + strand, within HP15_1907

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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2,016,195 + HP15_1905 0.62 -0.5
2,016,195 + HP15_1905 0.62 +1.4
2,016,195 + HP15_1905 0.62 -0.6
2,016,195 + HP15_1905 0.62 -1.6
2,016,203 - HP15_1905 0.62 -1.4
2,016,203 - HP15_1905 0.62 +0.7
2,016,406 + HP15_1905 0.70 +1.6
2,016,567 + HP15_1905 0.77 +1.2
2,016,615 - HP15_1905 0.78 +0.6
2,016,620 - HP15_1905 0.79 -1.5
2,016,620 - HP15_1905 0.79 -0.3
2,016,688 - HP15_1905 0.81 +1.7
2,016,700 - HP15_1905 0.82 -0.5
2,016,700 - HP15_1905 0.82 +1.1
2,016,704 + HP15_1905 0.82 -1.4
2,016,916 - +0.1
2,017,012 - +1.4
2,017,040 + +1.4
2,017,064 - -0.6
2,017,432 + HP15_1906 0.43 +0.4
2,017,501 + HP15_1906 0.54 +2.4
2,017,553 - HP15_1906 0.62 +0.5
2,017,657 - HP15_1906 0.79 +0.3
2,017,662 - HP15_1906 0.80 -0.0
2,017,662 - HP15_1906 0.80 +1.1
2,017,672 - HP15_1906 0.81 +1.7
2,017,674 + HP15_1906 0.82 +2.0
2,017,674 + HP15_1906 0.82 -0.7
2,017,692 - HP15_1906 0.85 +1.3
2,017,750 - -0.3
2,017,843 + -2.0
2,017,882 - +1.1
2,017,913 - +1.3
2,017,940 - HP15_1907 0.11 +0.9
2,018,110 - HP15_1907 0.24 +1.6
2,018,130 + HP15_1907 0.25 -0.2
2,018,191 + HP15_1907 0.29 +1.5
2,018,191 + HP15_1907 0.29 +1.2
2,018,191 + HP15_1907 0.29 +1.0
2,018,196 + HP15_1907 0.30 -0.6
2,018,196 + HP15_1907 0.30 -0.1
2,018,340 + HP15_1907 0.40 -1.0

Or see this region's nucleotide sequence