Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1905 and HP15_1906 are separated by 1 nucleotides HP15_1906 and HP15_1907 are separated by 1 nucleotides
HP15_1905: HP15_1905 - conserved hypothetical protein, at 2,014,616 to 2,017,165
_1905
HP15_1906: HP15_1906 - acetyltransferase-like protein, at 2,017,167 to 2,017,787
_1906
HP15_1907: HP15_1907 - coenzyme F390 synthetase-like protein, at 2,017,789 to 2,019,153
_1907
Position (kb)
2017
2018 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2016.195 kb on + strand, within HP15_1905 at 2016.195 kb on + strand, within HP15_1905 at 2016.195 kb on + strand, within HP15_1905 at 2016.195 kb on + strand, within HP15_1905 at 2016.203 kb on - strand, within HP15_1905 at 2016.203 kb on - strand, within HP15_1905 at 2016.406 kb on + strand, within HP15_1905 at 2016.567 kb on + strand, within HP15_1905 at 2016.615 kb on - strand, within HP15_1905 at 2016.620 kb on - strand, within HP15_1905 at 2016.620 kb on - strand, within HP15_1905 at 2016.688 kb on - strand, within HP15_1905 at 2016.700 kb on - strand, within HP15_1905 at 2016.700 kb on - strand, within HP15_1905 at 2016.704 kb on + strand, within HP15_1905 at 2016.916 kb on - strand at 2017.012 kb on - strand at 2017.040 kb on + strand at 2017.064 kb on - strand at 2017.432 kb on + strand, within HP15_1906 at 2017.501 kb on + strand, within HP15_1906 at 2017.553 kb on - strand, within HP15_1906 at 2017.657 kb on - strand, within HP15_1906 at 2017.662 kb on - strand, within HP15_1906 at 2017.662 kb on - strand, within HP15_1906 at 2017.672 kb on - strand, within HP15_1906 at 2017.674 kb on + strand, within HP15_1906 at 2017.674 kb on + strand, within HP15_1906 at 2017.692 kb on - strand, within HP15_1906 at 2017.750 kb on - strand at 2017.843 kb on + strand at 2017.882 kb on - strand at 2017.913 kb on - strand at 2017.940 kb on - strand, within HP15_1907 at 2018.110 kb on - strand, within HP15_1907 at 2018.130 kb on + strand, within HP15_1907 at 2018.191 kb on + strand, within HP15_1907 at 2018.191 kb on + strand, within HP15_1907 at 2018.191 kb on + strand, within HP15_1907 at 2018.196 kb on + strand, within HP15_1907 at 2018.196 kb on + strand, within HP15_1907 at 2018.340 kb on + strand, within HP15_1907
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 2,016,195 + HP15_1905 0.62 -0.5 2,016,195 + HP15_1905 0.62 +1.4 2,016,195 + HP15_1905 0.62 -0.6 2,016,195 + HP15_1905 0.62 -1.6 2,016,203 - HP15_1905 0.62 -1.4 2,016,203 - HP15_1905 0.62 +0.7 2,016,406 + HP15_1905 0.70 +1.6 2,016,567 + HP15_1905 0.77 +1.2 2,016,615 - HP15_1905 0.78 +0.6 2,016,620 - HP15_1905 0.79 -1.5 2,016,620 - HP15_1905 0.79 -0.3 2,016,688 - HP15_1905 0.81 +1.7 2,016,700 - HP15_1905 0.82 -0.5 2,016,700 - HP15_1905 0.82 +1.1 2,016,704 + HP15_1905 0.82 -1.4 2,016,916 - +0.1 2,017,012 - +1.4 2,017,040 + +1.4 2,017,064 - -0.6 2,017,432 + HP15_1906 0.43 +0.4 2,017,501 + HP15_1906 0.54 +2.4 2,017,553 - HP15_1906 0.62 +0.5 2,017,657 - HP15_1906 0.79 +0.3 2,017,662 - HP15_1906 0.80 -0.0 2,017,662 - HP15_1906 0.80 +1.1 2,017,672 - HP15_1906 0.81 +1.7 2,017,674 + HP15_1906 0.82 +2.0 2,017,674 + HP15_1906 0.82 -0.7 2,017,692 - HP15_1906 0.85 +1.3 2,017,750 - -0.3 2,017,843 + -2.0 2,017,882 - +1.1 2,017,913 - +1.3 2,017,940 - HP15_1907 0.11 +0.9 2,018,110 - HP15_1907 0.24 +1.6 2,018,130 + HP15_1907 0.25 -0.2 2,018,191 + HP15_1907 0.29 +1.5 2,018,191 + HP15_1907 0.29 +1.2 2,018,191 + HP15_1907 0.29 +1.0 2,018,196 + HP15_1907 0.30 -0.6 2,018,196 + HP15_1907 0.30 -0.1 2,018,340 + HP15_1907 0.40 -1.0
Or see this region's nucleotide sequence