Strain Fitness in Marinobacter adhaerens HP15 around HP15_1698

Experiment: DinoMM minimal media with L-Arginine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1697 and HP15_1698 are separated by 202 nucleotidesHP15_1698 and HP15_1699 are separated by 616 nucleotides HP15_1697: HP15_1697 - conserved hypothetical protein, at 1,786,291 to 1,787,217 _1697 HP15_1698: HP15_1698 - NADH-dependent flavin oxidoreductase, at 1,787,420 to 1,788,622 _1698 HP15_1699: HP15_1699 - resolvase, at 1,789,239 to 1,789,835 _1699 Position (kb) 1787 1788 1789Strain fitness (log2 ratio) -2 -1 0 1at 1786.449 kb on - strand, within HP15_1697at 1786.511 kb on + strand, within HP15_1697at 1786.545 kb on - strand, within HP15_1697at 1786.614 kb on + strand, within HP15_1697at 1786.614 kb on + strand, within HP15_1697at 1786.614 kb on + strand, within HP15_1697at 1786.622 kb on - strand, within HP15_1697at 1786.682 kb on - strand, within HP15_1697at 1786.968 kb on - strand, within HP15_1697at 1787.079 kb on - strand, within HP15_1697at 1787.235 kb on + strandat 1787.260 kb on + strandat 1787.269 kb on + strandat 1787.383 kb on - strandat 1787.600 kb on + strand, within HP15_1698at 1787.615 kb on + strand, within HP15_1698at 1787.644 kb on + strand, within HP15_1698at 1787.950 kb on - strand, within HP15_1698at 1787.971 kb on - strand, within HP15_1698at 1788.144 kb on + strand, within HP15_1698at 1788.188 kb on + strand, within HP15_1698at 1788.201 kb on - strand, within HP15_1698at 1788.259 kb on + strand, within HP15_1698at 1788.260 kb on + strand, within HP15_1698at 1788.342 kb on + strand, within HP15_1698at 1788.368 kb on + strand, within HP15_1698at 1788.582 kb on - strandat 1788.646 kb on + strandat 1788.709 kb on + strandat 1788.856 kb on - strandat 1788.856 kb on - strandat 1788.858 kb on + strandat 1788.866 kb on - strandat 1788.952 kb on - strandat 1789.083 kb on - strandat 1789.088 kb on - strandat 1789.179 kb on + strandat 1789.196 kb on + strandat 1789.196 kb on + strandat 1789.209 kb on + strandat 1789.251 kb on + strandat 1789.290 kb on - strandat 1789.301 kb on + strand, within HP15_1699at 1789.461 kb on - strand, within HP15_1699

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
remove
1,786,449 - HP15_1697 0.17 -0.2
1,786,511 + HP15_1697 0.24 -1.2
1,786,545 - HP15_1697 0.27 +0.3
1,786,614 + HP15_1697 0.35 -0.2
1,786,614 + HP15_1697 0.35 +0.6
1,786,614 + HP15_1697 0.35 +1.7
1,786,622 - HP15_1697 0.36 -0.2
1,786,682 - HP15_1697 0.42 +1.3
1,786,968 - HP15_1697 0.73 -1.6
1,787,079 - HP15_1697 0.85 +1.6
1,787,235 + +1.5
1,787,260 + -0.6
1,787,269 + -2.3
1,787,383 - -1.4
1,787,600 + HP15_1698 0.15 -1.3
1,787,615 + HP15_1698 0.16 +0.1
1,787,644 + HP15_1698 0.19 -0.8
1,787,950 - HP15_1698 0.44 -0.8
1,787,971 - HP15_1698 0.46 -0.0
1,788,144 + HP15_1698 0.60 -0.1
1,788,188 + HP15_1698 0.64 -1.3
1,788,201 - HP15_1698 0.65 +1.4
1,788,259 + HP15_1698 0.70 -0.9
1,788,260 + HP15_1698 0.70 +0.3
1,788,342 + HP15_1698 0.77 -0.9
1,788,368 + HP15_1698 0.79 +1.5
1,788,582 - -0.8
1,788,646 + -1.0
1,788,709 + -1.7
1,788,856 - +1.0
1,788,856 - +1.5
1,788,858 + +1.3
1,788,866 - +0.7
1,788,952 - -0.2
1,789,083 - -1.0
1,789,088 - -1.2
1,789,179 + -0.7
1,789,196 + -0.7
1,789,196 + -0.5
1,789,209 + +1.5
1,789,251 + -1.6
1,789,290 - -0.2
1,789,301 + HP15_1699 0.10 -0.1
1,789,461 - HP15_1699 0.37 +0.0

Or see this region's nucleotide sequence