Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1697 and HP15_1698 are separated by 202 nucleotides HP15_1698 and HP15_1699 are separated by 616 nucleotides
HP15_1697: HP15_1697 - conserved hypothetical protein, at 1,786,291 to 1,787,217
_1697
HP15_1698: HP15_1698 - NADH-dependent flavin oxidoreductase, at 1,787,420 to 1,788,622
_1698
HP15_1699: HP15_1699 - resolvase, at 1,789,239 to 1,789,835
_1699
Position (kb)
1787
1788
1789 Strain fitness (log2 ratio)
-2
-1
0
1 at 1786.449 kb on - strand, within HP15_1697 at 1786.511 kb on + strand, within HP15_1697 at 1786.545 kb on - strand, within HP15_1697 at 1786.614 kb on + strand, within HP15_1697 at 1786.614 kb on + strand, within HP15_1697 at 1786.614 kb on + strand, within HP15_1697 at 1786.622 kb on - strand, within HP15_1697 at 1786.682 kb on - strand, within HP15_1697 at 1786.968 kb on - strand, within HP15_1697 at 1787.079 kb on - strand, within HP15_1697 at 1787.235 kb on + strand at 1787.260 kb on + strand at 1787.269 kb on + strand at 1787.383 kb on - strand at 1787.600 kb on + strand, within HP15_1698 at 1787.615 kb on + strand, within HP15_1698 at 1787.644 kb on + strand, within HP15_1698 at 1787.950 kb on - strand, within HP15_1698 at 1787.971 kb on - strand, within HP15_1698 at 1788.144 kb on + strand, within HP15_1698 at 1788.188 kb on + strand, within HP15_1698 at 1788.201 kb on - strand, within HP15_1698 at 1788.259 kb on + strand, within HP15_1698 at 1788.260 kb on + strand, within HP15_1698 at 1788.342 kb on + strand, within HP15_1698 at 1788.368 kb on + strand, within HP15_1698 at 1788.582 kb on - strand at 1788.646 kb on + strand at 1788.709 kb on + strand at 1788.856 kb on - strand at 1788.856 kb on - strand at 1788.858 kb on + strand at 1788.866 kb on - strand at 1788.952 kb on - strand at 1789.083 kb on - strand at 1789.088 kb on - strand at 1789.179 kb on + strand at 1789.196 kb on + strand at 1789.196 kb on + strand at 1789.209 kb on + strand at 1789.251 kb on + strand at 1789.290 kb on - strand at 1789.301 kb on + strand, within HP15_1699 at 1789.461 kb on - strand, within HP15_1699
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 1,786,449 - HP15_1697 0.17 -0.2 1,786,511 + HP15_1697 0.24 -1.2 1,786,545 - HP15_1697 0.27 +0.3 1,786,614 + HP15_1697 0.35 -0.2 1,786,614 + HP15_1697 0.35 +0.6 1,786,614 + HP15_1697 0.35 +1.7 1,786,622 - HP15_1697 0.36 -0.2 1,786,682 - HP15_1697 0.42 +1.3 1,786,968 - HP15_1697 0.73 -1.6 1,787,079 - HP15_1697 0.85 +1.6 1,787,235 + +1.5 1,787,260 + -0.6 1,787,269 + -2.3 1,787,383 - -1.4 1,787,600 + HP15_1698 0.15 -1.3 1,787,615 + HP15_1698 0.16 +0.1 1,787,644 + HP15_1698 0.19 -0.8 1,787,950 - HP15_1698 0.44 -0.8 1,787,971 - HP15_1698 0.46 -0.0 1,788,144 + HP15_1698 0.60 -0.1 1,788,188 + HP15_1698 0.64 -1.3 1,788,201 - HP15_1698 0.65 +1.4 1,788,259 + HP15_1698 0.70 -0.9 1,788,260 + HP15_1698 0.70 +0.3 1,788,342 + HP15_1698 0.77 -0.9 1,788,368 + HP15_1698 0.79 +1.5 1,788,582 - -0.8 1,788,646 + -1.0 1,788,709 + -1.7 1,788,856 - +1.0 1,788,856 - +1.5 1,788,858 + +1.3 1,788,866 - +0.7 1,788,952 - -0.2 1,789,083 - -1.0 1,789,088 - -1.2 1,789,179 + -0.7 1,789,196 + -0.7 1,789,196 + -0.5 1,789,209 + +1.5 1,789,251 + -1.6 1,789,290 - -0.2 1,789,301 + HP15_1699 0.10 -0.1 1,789,461 - HP15_1699 0.37 +0.0
Or see this region's nucleotide sequence