Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1621 and HP15_1622 are separated by 100 nucleotides HP15_1622 and HP15_1623 overlap by 4 nucleotides
HP15_1621: HP15_1621 - transcriptional regulator, LysR family protein, at 1,718,034 to 1,718,945
_1621
HP15_1622: HP15_1622 - NADH dehydrogenase subunit L, at 1,719,046 to 1,720,665
_1622
HP15_1623: HP15_1623 - conserved hypothetical protein, at 1,720,662 to 1,723,118
_1623
Position (kb)
1719
1720
1721 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1718.137 kb on + strand, within HP15_1621 at 1718.145 kb on - strand, within HP15_1621 at 1718.145 kb on - strand, within HP15_1621 at 1718.155 kb on - strand, within HP15_1621 at 1718.177 kb on + strand, within HP15_1621 at 1718.316 kb on - strand, within HP15_1621 at 1718.419 kb on - strand, within HP15_1621 at 1718.511 kb on + strand, within HP15_1621 at 1718.511 kb on + strand, within HP15_1621 at 1718.530 kb on + strand, within HP15_1621 at 1718.579 kb on + strand, within HP15_1621 at 1718.663 kb on - strand, within HP15_1621 at 1718.779 kb on - strand, within HP15_1621 at 1719.158 kb on + strand at 1719.195 kb on + strand at 1719.279 kb on - strand, within HP15_1622 at 1719.308 kb on - strand, within HP15_1622 at 1719.364 kb on - strand, within HP15_1622 at 1719.422 kb on + strand, within HP15_1622 at 1719.500 kb on + strand, within HP15_1622 at 1719.506 kb on + strand, within HP15_1622 at 1719.530 kb on + strand, within HP15_1622 at 1719.611 kb on + strand, within HP15_1622 at 1719.611 kb on + strand, within HP15_1622 at 1719.655 kb on - strand, within HP15_1622 at 1719.657 kb on + strand, within HP15_1622 at 1719.672 kb on + strand, within HP15_1622 at 1719.771 kb on + strand, within HP15_1622 at 1719.817 kb on - strand, within HP15_1622 at 1719.817 kb on - strand, within HP15_1622 at 1719.827 kb on - strand, within HP15_1622 at 1719.961 kb on - strand, within HP15_1622 at 1720.010 kb on + strand, within HP15_1622 at 1720.038 kb on + strand at 1720.080 kb on + strand, within HP15_1622 at 1720.178 kb on - strand, within HP15_1622 at 1720.427 kb on + strand, within HP15_1622 at 1720.514 kb on + strand at 1720.628 kb on - strand at 1720.689 kb on + strand at 1720.723 kb on - strand at 1720.774 kb on + strand at 1720.780 kb on - strand at 1720.856 kb on + strand at 1720.859 kb on - strand at 1720.892 kb on + strand at 1721.010 kb on + strand, within HP15_1623 at 1721.028 kb on - strand, within HP15_1623 at 1721.028 kb on - strand, within HP15_1623 at 1721.093 kb on - strand, within HP15_1623 at 1721.233 kb on + strand, within HP15_1623 at 1721.242 kb on - strand, within HP15_1623 at 1721.281 kb on - strand, within HP15_1623 at 1721.289 kb on + strand, within HP15_1623 at 1721.333 kb on - strand, within HP15_1623 at 1721.344 kb on + strand, within HP15_1623 at 1721.352 kb on - strand, within HP15_1623 at 1721.362 kb on - strand, within HP15_1623 at 1721.409 kb on + strand, within HP15_1623 at 1721.481 kb on - strand, within HP15_1623 at 1721.486 kb on - strand, within HP15_1623 at 1721.492 kb on - strand, within HP15_1623
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 1,718,137 + HP15_1621 0.11 -1.1 1,718,145 - HP15_1621 0.12 +2.0 1,718,145 - HP15_1621 0.12 -0.0 1,718,155 - HP15_1621 0.13 -0.8 1,718,177 + HP15_1621 0.16 -0.6 1,718,316 - HP15_1621 0.31 +0.1 1,718,419 - HP15_1621 0.42 -0.6 1,718,511 + HP15_1621 0.52 +1.7 1,718,511 + HP15_1621 0.52 -0.2 1,718,530 + HP15_1621 0.54 -0.9 1,718,579 + HP15_1621 0.60 +0.3 1,718,663 - HP15_1621 0.69 -1.4 1,718,779 - HP15_1621 0.82 -0.7 1,719,158 + +2.9 1,719,195 + -0.0 1,719,279 - HP15_1622 0.14 -0.3 1,719,308 - HP15_1622 0.16 +0.3 1,719,364 - HP15_1622 0.20 +2.1 1,719,422 + HP15_1622 0.23 -0.3 1,719,500 + HP15_1622 0.28 -0.4 1,719,506 + HP15_1622 0.28 +0.9 1,719,530 + HP15_1622 0.30 +1.9 1,719,611 + HP15_1622 0.35 -0.1 1,719,611 + HP15_1622 0.35 +0.9 1,719,655 - HP15_1622 0.38 -0.8 1,719,657 + HP15_1622 0.38 +1.1 1,719,672 + HP15_1622 0.39 +1.1 1,719,771 + HP15_1622 0.45 +0.3 1,719,817 - HP15_1622 0.48 -0.7 1,719,817 - HP15_1622 0.48 -0.4 1,719,827 - HP15_1622 0.48 +1.0 1,719,961 - HP15_1622 0.56 +1.9 1,720,010 + HP15_1622 0.60 +0.3 1,720,038 + +0.3 1,720,080 + HP15_1622 0.64 +2.2 1,720,178 - HP15_1622 0.70 -1.0 1,720,427 + HP15_1622 0.85 +2.1 1,720,514 + +1.1 1,720,628 - +0.6 1,720,689 + +1.0 1,720,723 - -1.8 1,720,774 + -0.5 1,720,780 - +1.8 1,720,856 + +2.5 1,720,859 - -0.2 1,720,892 + -0.3 1,721,010 + HP15_1623 0.14 +1.9 1,721,028 - HP15_1623 0.15 -1.2 1,721,028 - HP15_1623 0.15 +1.9 1,721,093 - HP15_1623 0.18 +1.3 1,721,233 + HP15_1623 0.23 +1.6 1,721,242 - HP15_1623 0.24 -0.1 1,721,281 - HP15_1623 0.25 +1.3 1,721,289 + HP15_1623 0.26 +1.9 1,721,333 - HP15_1623 0.27 -0.7 1,721,344 + HP15_1623 0.28 +1.3 1,721,352 - HP15_1623 0.28 +0.7 1,721,362 - HP15_1623 0.28 +1.4 1,721,409 + HP15_1623 0.30 +0.9 1,721,481 - HP15_1623 0.33 +0.3 1,721,486 - HP15_1623 0.34 -2.1 1,721,492 - HP15_1623 0.34 +0.8
Or see this region's nucleotide sequence