Strain Fitness in Marinobacter adhaerens HP15 around HP15_1622

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1621 and HP15_1622 are separated by 100 nucleotidesHP15_1622 and HP15_1623 overlap by 4 nucleotides HP15_1621: HP15_1621 - transcriptional regulator, LysR family protein, at 1,718,034 to 1,718,945 _1621 HP15_1622: HP15_1622 - NADH dehydrogenase subunit L, at 1,719,046 to 1,720,665 _1622 HP15_1623: HP15_1623 - conserved hypothetical protein, at 1,720,662 to 1,723,118 _1623 Position (kb) 1719 1720 1721Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1718.137 kb on + strand, within HP15_1621at 1718.145 kb on - strand, within HP15_1621at 1718.145 kb on - strand, within HP15_1621at 1718.155 kb on - strand, within HP15_1621at 1718.177 kb on + strand, within HP15_1621at 1718.316 kb on - strand, within HP15_1621at 1718.419 kb on - strand, within HP15_1621at 1718.511 kb on + strand, within HP15_1621at 1718.511 kb on + strand, within HP15_1621at 1718.530 kb on + strand, within HP15_1621at 1718.579 kb on + strand, within HP15_1621at 1718.663 kb on - strand, within HP15_1621at 1718.779 kb on - strand, within HP15_1621at 1719.158 kb on + strandat 1719.195 kb on + strandat 1719.279 kb on - strand, within HP15_1622at 1719.308 kb on - strand, within HP15_1622at 1719.364 kb on - strand, within HP15_1622at 1719.422 kb on + strand, within HP15_1622at 1719.500 kb on + strand, within HP15_1622at 1719.506 kb on + strand, within HP15_1622at 1719.530 kb on + strand, within HP15_1622at 1719.611 kb on + strand, within HP15_1622at 1719.611 kb on + strand, within HP15_1622at 1719.655 kb on - strand, within HP15_1622at 1719.657 kb on + strand, within HP15_1622at 1719.672 kb on + strand, within HP15_1622at 1719.771 kb on + strand, within HP15_1622at 1719.817 kb on - strand, within HP15_1622at 1719.817 kb on - strand, within HP15_1622at 1719.827 kb on - strand, within HP15_1622at 1719.961 kb on - strand, within HP15_1622at 1720.010 kb on + strand, within HP15_1622at 1720.038 kb on + strandat 1720.080 kb on + strand, within HP15_1622at 1720.178 kb on - strand, within HP15_1622at 1720.427 kb on + strand, within HP15_1622at 1720.514 kb on + strandat 1720.628 kb on - strandat 1720.689 kb on + strandat 1720.723 kb on - strandat 1720.774 kb on + strandat 1720.780 kb on - strandat 1720.856 kb on + strandat 1720.859 kb on - strandat 1720.892 kb on + strandat 1721.010 kb on + strand, within HP15_1623at 1721.028 kb on - strand, within HP15_1623at 1721.028 kb on - strand, within HP15_1623at 1721.093 kb on - strand, within HP15_1623at 1721.233 kb on + strand, within HP15_1623at 1721.242 kb on - strand, within HP15_1623at 1721.281 kb on - strand, within HP15_1623at 1721.289 kb on + strand, within HP15_1623at 1721.333 kb on - strand, within HP15_1623at 1721.344 kb on + strand, within HP15_1623at 1721.352 kb on - strand, within HP15_1623at 1721.362 kb on - strand, within HP15_1623at 1721.409 kb on + strand, within HP15_1623at 1721.481 kb on - strand, within HP15_1623at 1721.486 kb on - strand, within HP15_1623at 1721.492 kb on - strand, within HP15_1623

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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1,718,137 + HP15_1621 0.11 -1.1
1,718,145 - HP15_1621 0.12 +2.0
1,718,145 - HP15_1621 0.12 -0.0
1,718,155 - HP15_1621 0.13 -0.8
1,718,177 + HP15_1621 0.16 -0.6
1,718,316 - HP15_1621 0.31 +0.1
1,718,419 - HP15_1621 0.42 -0.6
1,718,511 + HP15_1621 0.52 +1.7
1,718,511 + HP15_1621 0.52 -0.2
1,718,530 + HP15_1621 0.54 -0.9
1,718,579 + HP15_1621 0.60 +0.3
1,718,663 - HP15_1621 0.69 -1.4
1,718,779 - HP15_1621 0.82 -0.7
1,719,158 + +2.9
1,719,195 + -0.0
1,719,279 - HP15_1622 0.14 -0.3
1,719,308 - HP15_1622 0.16 +0.3
1,719,364 - HP15_1622 0.20 +2.1
1,719,422 + HP15_1622 0.23 -0.3
1,719,500 + HP15_1622 0.28 -0.4
1,719,506 + HP15_1622 0.28 +0.9
1,719,530 + HP15_1622 0.30 +1.9
1,719,611 + HP15_1622 0.35 -0.1
1,719,611 + HP15_1622 0.35 +0.9
1,719,655 - HP15_1622 0.38 -0.8
1,719,657 + HP15_1622 0.38 +1.1
1,719,672 + HP15_1622 0.39 +1.1
1,719,771 + HP15_1622 0.45 +0.3
1,719,817 - HP15_1622 0.48 -0.7
1,719,817 - HP15_1622 0.48 -0.4
1,719,827 - HP15_1622 0.48 +1.0
1,719,961 - HP15_1622 0.56 +1.9
1,720,010 + HP15_1622 0.60 +0.3
1,720,038 + +0.3
1,720,080 + HP15_1622 0.64 +2.2
1,720,178 - HP15_1622 0.70 -1.0
1,720,427 + HP15_1622 0.85 +2.1
1,720,514 + +1.1
1,720,628 - +0.6
1,720,689 + +1.0
1,720,723 - -1.8
1,720,774 + -0.5
1,720,780 - +1.8
1,720,856 + +2.5
1,720,859 - -0.2
1,720,892 + -0.3
1,721,010 + HP15_1623 0.14 +1.9
1,721,028 - HP15_1623 0.15 -1.2
1,721,028 - HP15_1623 0.15 +1.9
1,721,093 - HP15_1623 0.18 +1.3
1,721,233 + HP15_1623 0.23 +1.6
1,721,242 - HP15_1623 0.24 -0.1
1,721,281 - HP15_1623 0.25 +1.3
1,721,289 + HP15_1623 0.26 +1.9
1,721,333 - HP15_1623 0.27 -0.7
1,721,344 + HP15_1623 0.28 +1.3
1,721,352 - HP15_1623 0.28 +0.7
1,721,362 - HP15_1623 0.28 +1.4
1,721,409 + HP15_1623 0.30 +0.9
1,721,481 - HP15_1623 0.33 +0.3
1,721,486 - HP15_1623 0.34 -2.1
1,721,492 - HP15_1623 0.34 +0.8

Or see this region's nucleotide sequence