Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1410 and HP15_1411 are separated by 88 nucleotides HP15_1411 and HP15_1412 are separated by 13 nucleotides HP15_1412 and HP15_1413 are separated by 144 nucleotides HP15_1413 and HP15_1414 are separated by 16 nucleotides
HP15_1410: HP15_1410 - iron(III) compound receptor, at 1,489,076 to 1,491,175
_1410
HP15_1411: HP15_1411 - hypothetical 3-methyladenine DNA glycosylase, at 1,491,264 to 1,491,929
_1411
HP15_1412: HP15_1412 - conserved hypothetical protein, membrane, at 1,491,943 to 1,493,067
_1412
HP15_1413: HP15_1413 - protein containing GCN5-related N-acetyltransferase domain, at 1,493,212 to 1,493,787
_1413
HP15_1414: HP15_1414 - histone deacetylase superfamily protein, at 1,493,804 to 1,494,910
_1414
Position (kb)
1491
1492
1493
1494 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1490.958 kb on + strand, within HP15_1410 at 1490.963 kb on + strand, within HP15_1410 at 1491.136 kb on + strand at 1491.144 kb on - strand at 1491.149 kb on + strand at 1491.397 kb on + strand, within HP15_1411 at 1491.400 kb on - strand, within HP15_1411 at 1491.400 kb on - strand, within HP15_1411 at 1491.405 kb on - strand, within HP15_1411 at 1491.431 kb on + strand, within HP15_1411 at 1491.431 kb on + strand, within HP15_1411 at 1491.508 kb on + strand, within HP15_1411 at 1491.530 kb on + strand, within HP15_1411 at 1491.535 kb on + strand, within HP15_1411 at 1491.715 kb on - strand, within HP15_1411 at 1491.777 kb on - strand, within HP15_1411 at 1491.932 kb on - strand at 1492.157 kb on + strand, within HP15_1412 at 1492.165 kb on - strand, within HP15_1412 at 1492.184 kb on - strand, within HP15_1412 at 1492.249 kb on + strand, within HP15_1412 at 1492.268 kb on + strand, within HP15_1412 at 1492.274 kb on - strand, within HP15_1412 at 1492.325 kb on + strand, within HP15_1412 at 1492.671 kb on - strand, within HP15_1412 at 1492.707 kb on + strand, within HP15_1412 at 1492.721 kb on + strand, within HP15_1412 at 1492.763 kb on + strand, within HP15_1412 at 1492.894 kb on - strand, within HP15_1412 at 1493.104 kb on + strand at 1493.104 kb on + strand at 1493.112 kb on - strand at 1493.169 kb on - strand at 1493.228 kb on - strand at 1493.265 kb on + strand at 1493.564 kb on + strand, within HP15_1413 at 1493.605 kb on + strand, within HP15_1413 at 1493.625 kb on - strand, within HP15_1413 at 1493.650 kb on + strand, within HP15_1413 at 1493.695 kb on + strand, within HP15_1413 at 1493.860 kb on + strand at 1493.954 kb on - strand, within HP15_1414 at 1493.973 kb on - strand, within HP15_1414
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 1,490,958 + HP15_1410 0.90 -1.1 1,490,963 + HP15_1410 0.90 +3.0 1,491,136 + +0.6 1,491,144 - +1.3 1,491,149 + +0.3 1,491,397 + HP15_1411 0.20 +0.3 1,491,400 - HP15_1411 0.20 -0.7 1,491,400 - HP15_1411 0.20 +0.6 1,491,405 - HP15_1411 0.21 +1.1 1,491,431 + HP15_1411 0.25 -0.2 1,491,431 + HP15_1411 0.25 -0.5 1,491,508 + HP15_1411 0.37 +1.2 1,491,530 + HP15_1411 0.40 -0.3 1,491,535 + HP15_1411 0.41 -0.9 1,491,715 - HP15_1411 0.68 -0.8 1,491,777 - HP15_1411 0.77 -0.7 1,491,932 - +0.7 1,492,157 + HP15_1412 0.19 -1.1 1,492,165 - HP15_1412 0.20 -1.5 1,492,184 - HP15_1412 0.21 +1.5 1,492,249 + HP15_1412 0.27 +1.0 1,492,268 + HP15_1412 0.29 -0.1 1,492,274 - HP15_1412 0.29 -0.9 1,492,325 + HP15_1412 0.34 -0.7 1,492,671 - HP15_1412 0.65 -0.6 1,492,707 + HP15_1412 0.68 +1.5 1,492,721 + HP15_1412 0.69 +1.5 1,492,763 + HP15_1412 0.73 -0.4 1,492,894 - HP15_1412 0.85 -0.1 1,493,104 + +0.3 1,493,104 + -1.0 1,493,112 - -0.7 1,493,169 - +1.7 1,493,228 - +0.5 1,493,265 + +1.7 1,493,564 + HP15_1413 0.61 +0.5 1,493,605 + HP15_1413 0.68 -0.6 1,493,625 - HP15_1413 0.72 +1.1 1,493,650 + HP15_1413 0.76 +2.3 1,493,695 + HP15_1413 0.84 +2.2 1,493,860 + +1.3 1,493,954 - HP15_1414 0.14 -0.9 1,493,973 - HP15_1414 0.15 -0.7
Or see this region's nucleotide sequence