Strain Fitness in Marinobacter adhaerens HP15 around HP15_1410

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1408 and HP15_1409 are separated by 104 nucleotidesHP15_1409 and HP15_1410 are separated by 51 nucleotidesHP15_1410 and HP15_1411 are separated by 88 nucleotidesHP15_1411 and HP15_1412 are separated by 13 nucleotides HP15_1408: HP15_1408 - pirin domain protein, at 1,487,763 to 1,488,674 _1408 HP15_1409: HP15_1409 - protein containing DUF1289, at 1,488,779 to 1,489,024 _1409 HP15_1410: HP15_1410 - iron(III) compound receptor, at 1,489,076 to 1,491,175 _1410 HP15_1411: HP15_1411 - hypothetical 3-methyladenine DNA glycosylase, at 1,491,264 to 1,491,929 _1411 HP15_1412: HP15_1412 - conserved hypothetical protein, membrane, at 1,491,943 to 1,493,067 _1412 Position (kb) 1489 1490 1491 1492Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1488.179 kb on - strand, within HP15_1408at 1488.310 kb on + strand, within HP15_1408at 1488.310 kb on + strand, within HP15_1408at 1488.421 kb on - strand, within HP15_1408at 1488.527 kb on + strand, within HP15_1408at 1488.535 kb on - strand, within HP15_1408at 1488.602 kb on + strandat 1488.612 kb on + strandat 1488.619 kb on - strandat 1488.725 kb on + strandat 1488.733 kb on + strandat 1488.733 kb on + strandat 1488.741 kb on - strandat 1488.746 kb on - strandat 1488.792 kb on - strandat 1488.946 kb on - strand, within HP15_1409at 1489.137 kb on + strandat 1489.138 kb on - strandat 1489.207 kb on - strandat 1489.240 kb on + strandat 1489.313 kb on + strand, within HP15_1410at 1489.465 kb on + strand, within HP15_1410at 1489.495 kb on + strand, within HP15_1410at 1489.574 kb on + strand, within HP15_1410at 1489.637 kb on + strand, within HP15_1410at 1489.730 kb on + strand, within HP15_1410at 1489.738 kb on - strand, within HP15_1410at 1489.757 kb on - strand, within HP15_1410at 1489.789 kb on + strand, within HP15_1410at 1489.797 kb on - strand, within HP15_1410at 1489.870 kb on + strand, within HP15_1410at 1490.007 kb on + strand, within HP15_1410at 1490.022 kb on - strand, within HP15_1410at 1490.065 kb on + strand, within HP15_1410at 1490.073 kb on - strand, within HP15_1410at 1490.269 kb on + strand, within HP15_1410at 1490.269 kb on + strand, within HP15_1410at 1490.274 kb on + strand, within HP15_1410at 1490.277 kb on - strand, within HP15_1410at 1490.356 kb on + strand, within HP15_1410at 1490.372 kb on - strand, within HP15_1410at 1490.393 kb on + strand, within HP15_1410at 1490.403 kb on - strand, within HP15_1410at 1490.501 kb on + strand, within HP15_1410at 1490.602 kb on + strand, within HP15_1410at 1490.618 kb on - strand, within HP15_1410at 1490.622 kb on + strand, within HP15_1410at 1490.622 kb on + strand, within HP15_1410at 1490.681 kb on + strand, within HP15_1410at 1490.719 kb on - strand, within HP15_1410at 1490.766 kb on + strand, within HP15_1410at 1490.878 kb on + strand, within HP15_1410at 1490.878 kb on + strand, within HP15_1410at 1490.880 kb on - strand, within HP15_1410at 1490.886 kb on + strand, within HP15_1410at 1490.886 kb on + strand, within HP15_1410at 1490.886 kb on - strand, within HP15_1410at 1490.894 kb on - strand, within HP15_1410at 1490.894 kb on - strand, within HP15_1410at 1490.958 kb on + strand, within HP15_1410at 1490.963 kb on + strand, within HP15_1410at 1491.136 kb on + strandat 1491.144 kb on - strandat 1491.149 kb on + strandat 1491.397 kb on + strand, within HP15_1411at 1491.400 kb on - strand, within HP15_1411at 1491.400 kb on - strand, within HP15_1411at 1491.405 kb on - strand, within HP15_1411at 1491.431 kb on + strand, within HP15_1411at 1491.431 kb on + strand, within HP15_1411at 1491.508 kb on + strand, within HP15_1411at 1491.530 kb on + strand, within HP15_1411at 1491.535 kb on + strand, within HP15_1411at 1491.715 kb on - strand, within HP15_1411at 1491.777 kb on - strand, within HP15_1411at 1491.932 kb on - strandat 1492.157 kb on + strand, within HP15_1412at 1492.165 kb on - strand, within HP15_1412

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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1,488,179 - HP15_1408 0.46 +0.2
1,488,310 + HP15_1408 0.60 -0.1
1,488,310 + HP15_1408 0.60 -0.5
1,488,421 - HP15_1408 0.72 -0.4
1,488,527 + HP15_1408 0.84 +2.9
1,488,535 - HP15_1408 0.85 -1.3
1,488,602 + -0.1
1,488,612 + +1.5
1,488,619 - +0.9
1,488,725 + +1.0
1,488,733 + -3.1
1,488,733 + +0.5
1,488,741 - -0.4
1,488,746 - +1.2
1,488,792 - +0.5
1,488,946 - HP15_1409 0.68 -0.3
1,489,137 + +1.7
1,489,138 - -1.3
1,489,207 - -0.6
1,489,240 + +1.8
1,489,313 + HP15_1410 0.11 -0.7
1,489,465 + HP15_1410 0.19 +0.2
1,489,495 + HP15_1410 0.20 +0.1
1,489,574 + HP15_1410 0.24 +1.6
1,489,637 + HP15_1410 0.27 -1.1
1,489,730 + HP15_1410 0.31 +1.8
1,489,738 - HP15_1410 0.32 -0.5
1,489,757 - HP15_1410 0.32 +1.9
1,489,789 + HP15_1410 0.34 -2.1
1,489,797 - HP15_1410 0.34 +1.8
1,489,870 + HP15_1410 0.38 -1.7
1,490,007 + HP15_1410 0.44 +0.7
1,490,022 - HP15_1410 0.45 +0.5
1,490,065 + HP15_1410 0.47 +0.8
1,490,073 - HP15_1410 0.47 +1.2
1,490,269 + HP15_1410 0.57 +2.1
1,490,269 + HP15_1410 0.57 -0.3
1,490,274 + HP15_1410 0.57 +1.0
1,490,277 - HP15_1410 0.57 -0.4
1,490,356 + HP15_1410 0.61 -0.8
1,490,372 - HP15_1410 0.62 -0.4
1,490,393 + HP15_1410 0.63 +0.9
1,490,403 - HP15_1410 0.63 +0.9
1,490,501 + HP15_1410 0.68 -0.5
1,490,602 + HP15_1410 0.73 +2.2
1,490,618 - HP15_1410 0.73 -0.3
1,490,622 + HP15_1410 0.74 -0.3
1,490,622 + HP15_1410 0.74 -2.3
1,490,681 + HP15_1410 0.76 -0.1
1,490,719 - HP15_1410 0.78 +2.1
1,490,766 + HP15_1410 0.80 +2.1
1,490,878 + HP15_1410 0.86 +1.1
1,490,878 + HP15_1410 0.86 -1.0
1,490,880 - HP15_1410 0.86 +2.6
1,490,886 + HP15_1410 0.86 -0.3
1,490,886 + HP15_1410 0.86 +2.5
1,490,886 - HP15_1410 0.86 +2.0
1,490,894 - HP15_1410 0.87 -1.1
1,490,894 - HP15_1410 0.87 -0.1
1,490,958 + HP15_1410 0.90 -1.1
1,490,963 + HP15_1410 0.90 +3.0
1,491,136 + +0.6
1,491,144 - +1.3
1,491,149 + +0.3
1,491,397 + HP15_1411 0.20 +0.3
1,491,400 - HP15_1411 0.20 -0.7
1,491,400 - HP15_1411 0.20 +0.6
1,491,405 - HP15_1411 0.21 +1.1
1,491,431 + HP15_1411 0.25 -0.2
1,491,431 + HP15_1411 0.25 -0.5
1,491,508 + HP15_1411 0.37 +1.2
1,491,530 + HP15_1411 0.40 -0.3
1,491,535 + HP15_1411 0.41 -0.9
1,491,715 - HP15_1411 0.68 -0.8
1,491,777 - HP15_1411 0.77 -0.7
1,491,932 - +0.7
1,492,157 + HP15_1412 0.19 -1.1
1,492,165 - HP15_1412 0.20 -1.5

Or see this region's nucleotide sequence