Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1408 and HP15_1409 are separated by 104 nucleotides HP15_1409 and HP15_1410 are separated by 51 nucleotides HP15_1410 and HP15_1411 are separated by 88 nucleotides HP15_1411 and HP15_1412 are separated by 13 nucleotides
HP15_1408: HP15_1408 - pirin domain protein, at 1,487,763 to 1,488,674
_1408
HP15_1409: HP15_1409 - protein containing DUF1289, at 1,488,779 to 1,489,024
_1409
HP15_1410: HP15_1410 - iron(III) compound receptor, at 1,489,076 to 1,491,175
_1410
HP15_1411: HP15_1411 - hypothetical 3-methyladenine DNA glycosylase, at 1,491,264 to 1,491,929
_1411
HP15_1412: HP15_1412 - conserved hypothetical protein, membrane, at 1,491,943 to 1,493,067
_1412
Position (kb)
1489
1490
1491
1492 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1488.179 kb on - strand, within HP15_1408 at 1488.310 kb on + strand, within HP15_1408 at 1488.310 kb on + strand, within HP15_1408 at 1488.421 kb on - strand, within HP15_1408 at 1488.527 kb on + strand, within HP15_1408 at 1488.535 kb on - strand, within HP15_1408 at 1488.602 kb on + strand at 1488.612 kb on + strand at 1488.619 kb on - strand at 1488.725 kb on + strand at 1488.733 kb on + strand at 1488.733 kb on + strand at 1488.741 kb on - strand at 1488.746 kb on - strand at 1488.792 kb on - strand at 1488.946 kb on - strand, within HP15_1409 at 1489.137 kb on + strand at 1489.138 kb on - strand at 1489.207 kb on - strand at 1489.240 kb on + strand at 1489.313 kb on + strand, within HP15_1410 at 1489.465 kb on + strand, within HP15_1410 at 1489.495 kb on + strand, within HP15_1410 at 1489.574 kb on + strand, within HP15_1410 at 1489.637 kb on + strand, within HP15_1410 at 1489.730 kb on + strand, within HP15_1410 at 1489.738 kb on - strand, within HP15_1410 at 1489.757 kb on - strand, within HP15_1410 at 1489.789 kb on + strand, within HP15_1410 at 1489.797 kb on - strand, within HP15_1410 at 1489.870 kb on + strand, within HP15_1410 at 1490.007 kb on + strand, within HP15_1410 at 1490.022 kb on - strand, within HP15_1410 at 1490.065 kb on + strand, within HP15_1410 at 1490.073 kb on - strand, within HP15_1410 at 1490.269 kb on + strand, within HP15_1410 at 1490.269 kb on + strand, within HP15_1410 at 1490.274 kb on + strand, within HP15_1410 at 1490.277 kb on - strand, within HP15_1410 at 1490.356 kb on + strand, within HP15_1410 at 1490.372 kb on - strand, within HP15_1410 at 1490.393 kb on + strand, within HP15_1410 at 1490.403 kb on - strand, within HP15_1410 at 1490.501 kb on + strand, within HP15_1410 at 1490.602 kb on + strand, within HP15_1410 at 1490.618 kb on - strand, within HP15_1410 at 1490.622 kb on + strand, within HP15_1410 at 1490.622 kb on + strand, within HP15_1410 at 1490.681 kb on + strand, within HP15_1410 at 1490.719 kb on - strand, within HP15_1410 at 1490.766 kb on + strand, within HP15_1410 at 1490.878 kb on + strand, within HP15_1410 at 1490.878 kb on + strand, within HP15_1410 at 1490.880 kb on - strand, within HP15_1410 at 1490.886 kb on + strand, within HP15_1410 at 1490.886 kb on + strand, within HP15_1410 at 1490.886 kb on - strand, within HP15_1410 at 1490.894 kb on - strand, within HP15_1410 at 1490.894 kb on - strand, within HP15_1410 at 1490.958 kb on + strand, within HP15_1410 at 1490.963 kb on + strand, within HP15_1410 at 1491.136 kb on + strand at 1491.144 kb on - strand at 1491.149 kb on + strand at 1491.397 kb on + strand, within HP15_1411 at 1491.400 kb on - strand, within HP15_1411 at 1491.400 kb on - strand, within HP15_1411 at 1491.405 kb on - strand, within HP15_1411 at 1491.431 kb on + strand, within HP15_1411 at 1491.431 kb on + strand, within HP15_1411 at 1491.508 kb on + strand, within HP15_1411 at 1491.530 kb on + strand, within HP15_1411 at 1491.535 kb on + strand, within HP15_1411 at 1491.715 kb on - strand, within HP15_1411 at 1491.777 kb on - strand, within HP15_1411 at 1491.932 kb on - strand at 1492.157 kb on + strand, within HP15_1412 at 1492.165 kb on - strand, within HP15_1412
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 1,488,179 - HP15_1408 0.46 +0.2 1,488,310 + HP15_1408 0.60 -0.1 1,488,310 + HP15_1408 0.60 -0.5 1,488,421 - HP15_1408 0.72 -0.4 1,488,527 + HP15_1408 0.84 +2.9 1,488,535 - HP15_1408 0.85 -1.3 1,488,602 + -0.1 1,488,612 + +1.5 1,488,619 - +0.9 1,488,725 + +1.0 1,488,733 + -3.1 1,488,733 + +0.5 1,488,741 - -0.4 1,488,746 - +1.2 1,488,792 - +0.5 1,488,946 - HP15_1409 0.68 -0.3 1,489,137 + +1.7 1,489,138 - -1.3 1,489,207 - -0.6 1,489,240 + +1.8 1,489,313 + HP15_1410 0.11 -0.7 1,489,465 + HP15_1410 0.19 +0.2 1,489,495 + HP15_1410 0.20 +0.1 1,489,574 + HP15_1410 0.24 +1.6 1,489,637 + HP15_1410 0.27 -1.1 1,489,730 + HP15_1410 0.31 +1.8 1,489,738 - HP15_1410 0.32 -0.5 1,489,757 - HP15_1410 0.32 +1.9 1,489,789 + HP15_1410 0.34 -2.1 1,489,797 - HP15_1410 0.34 +1.8 1,489,870 + HP15_1410 0.38 -1.7 1,490,007 + HP15_1410 0.44 +0.7 1,490,022 - HP15_1410 0.45 +0.5 1,490,065 + HP15_1410 0.47 +0.8 1,490,073 - HP15_1410 0.47 +1.2 1,490,269 + HP15_1410 0.57 +2.1 1,490,269 + HP15_1410 0.57 -0.3 1,490,274 + HP15_1410 0.57 +1.0 1,490,277 - HP15_1410 0.57 -0.4 1,490,356 + HP15_1410 0.61 -0.8 1,490,372 - HP15_1410 0.62 -0.4 1,490,393 + HP15_1410 0.63 +0.9 1,490,403 - HP15_1410 0.63 +0.9 1,490,501 + HP15_1410 0.68 -0.5 1,490,602 + HP15_1410 0.73 +2.2 1,490,618 - HP15_1410 0.73 -0.3 1,490,622 + HP15_1410 0.74 -0.3 1,490,622 + HP15_1410 0.74 -2.3 1,490,681 + HP15_1410 0.76 -0.1 1,490,719 - HP15_1410 0.78 +2.1 1,490,766 + HP15_1410 0.80 +2.1 1,490,878 + HP15_1410 0.86 +1.1 1,490,878 + HP15_1410 0.86 -1.0 1,490,880 - HP15_1410 0.86 +2.6 1,490,886 + HP15_1410 0.86 -0.3 1,490,886 + HP15_1410 0.86 +2.5 1,490,886 - HP15_1410 0.86 +2.0 1,490,894 - HP15_1410 0.87 -1.1 1,490,894 - HP15_1410 0.87 -0.1 1,490,958 + HP15_1410 0.90 -1.1 1,490,963 + HP15_1410 0.90 +3.0 1,491,136 + +0.6 1,491,144 - +1.3 1,491,149 + +0.3 1,491,397 + HP15_1411 0.20 +0.3 1,491,400 - HP15_1411 0.20 -0.7 1,491,400 - HP15_1411 0.20 +0.6 1,491,405 - HP15_1411 0.21 +1.1 1,491,431 + HP15_1411 0.25 -0.2 1,491,431 + HP15_1411 0.25 -0.5 1,491,508 + HP15_1411 0.37 +1.2 1,491,530 + HP15_1411 0.40 -0.3 1,491,535 + HP15_1411 0.41 -0.9 1,491,715 - HP15_1411 0.68 -0.8 1,491,777 - HP15_1411 0.77 -0.7 1,491,932 - +0.7 1,492,157 + HP15_1412 0.19 -1.1 1,492,165 - HP15_1412 0.20 -1.5
Or see this region's nucleotide sequence