Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1236 and HP15_1237 are separated by 178 nucleotides HP15_1237 and HP15_1238 are separated by 19 nucleotides HP15_1238 and HP15_1239 are separated by 275 nucleotides
HP15_1236: HP15_1236 - conserved hypothetical protein, at 1,285,897 to 1,288,026
_1236
HP15_1237: HP15_1237 - regulatory protein RecX-like protein, at 1,288,205 to 1,288,675
_1237
HP15_1238: HP15_1238 - transglycosylase, Slt family protein, at 1,288,695 to 1,290,215
_1238
HP15_1239: HP15_1239 - phosphoribosylformylglycinamidine synthase, at 1,290,491 to 1,294,396
_1239
Position (kb)
1288
1289
1290
1291 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1287.774 kb on - strand, within HP15_1236 at 1287.890 kb on + strand at 1287.891 kb on - strand at 1287.900 kb on + strand at 1287.900 kb on + strand at 1287.900 kb on + strand at 1287.974 kb on - strand at 1287.985 kb on - strand at 1288.021 kb on + strand at 1288.256 kb on + strand, within HP15_1237 at 1288.290 kb on + strand, within HP15_1237 at 1288.402 kb on + strand, within HP15_1237 at 1288.475 kb on + strand, within HP15_1237 at 1288.477 kb on + strand, within HP15_1237 at 1288.483 kb on - strand, within HP15_1237 at 1288.492 kb on - strand, within HP15_1237 at 1288.502 kb on - strand, within HP15_1237 at 1288.516 kb on + strand, within HP15_1237 at 1288.516 kb on + strand, within HP15_1237 at 1288.524 kb on - strand, within HP15_1237 at 1288.554 kb on + strand, within HP15_1237 at 1288.608 kb on - strand, within HP15_1237 at 1288.865 kb on + strand, within HP15_1238 at 1288.873 kb on - strand, within HP15_1238 at 1288.994 kb on + strand, within HP15_1238 at 1288.999 kb on + strand, within HP15_1238 at 1289.085 kb on - strand, within HP15_1238 at 1289.240 kb on - strand, within HP15_1238 at 1289.244 kb on - strand, within HP15_1238 at 1289.508 kb on - strand, within HP15_1238 at 1289.508 kb on - strand, within HP15_1238 at 1289.553 kb on + strand, within HP15_1238 at 1289.580 kb on - strand, within HP15_1238 at 1289.672 kb on + strand, within HP15_1238 at 1289.672 kb on + strand, within HP15_1238 at 1289.738 kb on - strand, within HP15_1238 at 1289.740 kb on - strand, within HP15_1238 at 1289.796 kb on - strand, within HP15_1238 at 1289.796 kb on - strand, within HP15_1238 at 1289.877 kb on + strand, within HP15_1238 at 1289.880 kb on - strand, within HP15_1238 at 1289.972 kb on + strand, within HP15_1238 at 1289.972 kb on + strand, within HP15_1238 at 1289.980 kb on - strand, within HP15_1238 at 1290.112 kb on + strand at 1290.112 kb on + strand at 1290.112 kb on + strand at 1290.112 kb on + strand at 1290.120 kb on - strand at 1290.120 kb on - strand at 1290.120 kb on - strand at 1290.120 kb on - strand at 1290.120 kb on - strand at 1290.120 kb on - strand at 1290.151 kb on - strand at 1290.261 kb on - strand at 1290.268 kb on + strand at 1290.280 kb on - strand at 1290.285 kb on - strand at 1290.315 kb on - strand at 1290.336 kb on + strand at 1290.403 kb on + strand at 1290.416 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 1,287,774 - HP15_1236 0.88 +2.3 1,287,890 + +0.4 1,287,891 - +1.4 1,287,900 + +2.8 1,287,900 + +3.2 1,287,900 + +0.4 1,287,974 - +0.8 1,287,985 - -0.3 1,288,021 + -0.4 1,288,256 + HP15_1237 0.11 +0.2 1,288,290 + HP15_1237 0.18 -0.2 1,288,402 + HP15_1237 0.42 +0.3 1,288,475 + HP15_1237 0.57 -0.4 1,288,477 + HP15_1237 0.58 -0.2 1,288,483 - HP15_1237 0.59 +1.0 1,288,492 - HP15_1237 0.61 -1.1 1,288,502 - HP15_1237 0.63 +0.4 1,288,516 + HP15_1237 0.66 -1.0 1,288,516 + HP15_1237 0.66 -0.9 1,288,524 - HP15_1237 0.68 -0.9 1,288,554 + HP15_1237 0.74 +1.2 1,288,608 - HP15_1237 0.86 +2.6 1,288,865 + HP15_1238 0.11 -1.1 1,288,873 - HP15_1238 0.12 -1.7 1,288,994 + HP15_1238 0.20 -0.1 1,288,999 + HP15_1238 0.20 -0.0 1,289,085 - HP15_1238 0.26 +0.0 1,289,240 - HP15_1238 0.36 -1.3 1,289,244 - HP15_1238 0.36 -0.8 1,289,508 - HP15_1238 0.53 -1.1 1,289,508 - HP15_1238 0.53 -0.6 1,289,553 + HP15_1238 0.56 -0.2 1,289,580 - HP15_1238 0.58 -0.9 1,289,672 + HP15_1238 0.64 +1.6 1,289,672 + HP15_1238 0.64 -1.4 1,289,738 - HP15_1238 0.69 -0.5 1,289,740 - HP15_1238 0.69 -0.2 1,289,796 - HP15_1238 0.72 -0.4 1,289,796 - HP15_1238 0.72 +0.6 1,289,877 + HP15_1238 0.78 -0.7 1,289,880 - HP15_1238 0.78 +1.1 1,289,972 + HP15_1238 0.84 +1.2 1,289,972 + HP15_1238 0.84 -1.0 1,289,980 - HP15_1238 0.84 -1.0 1,290,112 + -0.9 1,290,112 + +0.2 1,290,112 + -0.1 1,290,112 + -0.0 1,290,120 - +0.5 1,290,120 - -1.5 1,290,120 - +0.2 1,290,120 - +2.0 1,290,120 - -0.4 1,290,120 - +0.4 1,290,151 - +1.5 1,290,261 - +1.5 1,290,268 + -0.0 1,290,280 - -0.5 1,290,285 - -0.1 1,290,315 - +1.6 1,290,336 + +0.7 1,290,403 + +1.3 1,290,416 - +0.4
Or see this region's nucleotide sequence