Strain Fitness in Marinobacter adhaerens HP15 around HP15_1238

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1236 and HP15_1237 are separated by 178 nucleotidesHP15_1237 and HP15_1238 are separated by 19 nucleotidesHP15_1238 and HP15_1239 are separated by 275 nucleotides HP15_1236: HP15_1236 - conserved hypothetical protein, at 1,285,897 to 1,288,026 _1236 HP15_1237: HP15_1237 - regulatory protein RecX-like protein, at 1,288,205 to 1,288,675 _1237 HP15_1238: HP15_1238 - transglycosylase, Slt family protein, at 1,288,695 to 1,290,215 _1238 HP15_1239: HP15_1239 - phosphoribosylformylglycinamidine synthase, at 1,290,491 to 1,294,396 _1239 Position (kb) 1288 1289 1290 1291Strain fitness (log2 ratio) -1 0 1 2 3at 1287.774 kb on - strand, within HP15_1236at 1287.890 kb on + strandat 1287.891 kb on - strandat 1287.900 kb on + strandat 1287.900 kb on + strandat 1287.900 kb on + strandat 1287.974 kb on - strandat 1287.985 kb on - strandat 1288.021 kb on + strandat 1288.256 kb on + strand, within HP15_1237at 1288.290 kb on + strand, within HP15_1237at 1288.402 kb on + strand, within HP15_1237at 1288.475 kb on + strand, within HP15_1237at 1288.477 kb on + strand, within HP15_1237at 1288.483 kb on - strand, within HP15_1237at 1288.492 kb on - strand, within HP15_1237at 1288.502 kb on - strand, within HP15_1237at 1288.516 kb on + strand, within HP15_1237at 1288.516 kb on + strand, within HP15_1237at 1288.524 kb on - strand, within HP15_1237at 1288.554 kb on + strand, within HP15_1237at 1288.608 kb on - strand, within HP15_1237at 1288.865 kb on + strand, within HP15_1238at 1288.873 kb on - strand, within HP15_1238at 1288.994 kb on + strand, within HP15_1238at 1288.999 kb on + strand, within HP15_1238at 1289.085 kb on - strand, within HP15_1238at 1289.240 kb on - strand, within HP15_1238at 1289.244 kb on - strand, within HP15_1238at 1289.508 kb on - strand, within HP15_1238at 1289.508 kb on - strand, within HP15_1238at 1289.553 kb on + strand, within HP15_1238at 1289.580 kb on - strand, within HP15_1238at 1289.672 kb on + strand, within HP15_1238at 1289.672 kb on + strand, within HP15_1238at 1289.738 kb on - strand, within HP15_1238at 1289.740 kb on - strand, within HP15_1238at 1289.796 kb on - strand, within HP15_1238at 1289.796 kb on - strand, within HP15_1238at 1289.877 kb on + strand, within HP15_1238at 1289.880 kb on - strand, within HP15_1238at 1289.972 kb on + strand, within HP15_1238at 1289.972 kb on + strand, within HP15_1238at 1289.980 kb on - strand, within HP15_1238at 1290.112 kb on + strandat 1290.112 kb on + strandat 1290.112 kb on + strandat 1290.112 kb on + strandat 1290.120 kb on - strandat 1290.120 kb on - strandat 1290.120 kb on - strandat 1290.120 kb on - strandat 1290.120 kb on - strandat 1290.120 kb on - strandat 1290.151 kb on - strandat 1290.261 kb on - strandat 1290.268 kb on + strandat 1290.280 kb on - strandat 1290.285 kb on - strandat 1290.315 kb on - strandat 1290.336 kb on + strandat 1290.403 kb on + strandat 1290.416 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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1,287,774 - HP15_1236 0.88 +2.3
1,287,890 + +0.4
1,287,891 - +1.4
1,287,900 + +2.8
1,287,900 + +3.2
1,287,900 + +0.4
1,287,974 - +0.8
1,287,985 - -0.3
1,288,021 + -0.4
1,288,256 + HP15_1237 0.11 +0.2
1,288,290 + HP15_1237 0.18 -0.2
1,288,402 + HP15_1237 0.42 +0.3
1,288,475 + HP15_1237 0.57 -0.4
1,288,477 + HP15_1237 0.58 -0.2
1,288,483 - HP15_1237 0.59 +1.0
1,288,492 - HP15_1237 0.61 -1.1
1,288,502 - HP15_1237 0.63 +0.4
1,288,516 + HP15_1237 0.66 -1.0
1,288,516 + HP15_1237 0.66 -0.9
1,288,524 - HP15_1237 0.68 -0.9
1,288,554 + HP15_1237 0.74 +1.2
1,288,608 - HP15_1237 0.86 +2.6
1,288,865 + HP15_1238 0.11 -1.1
1,288,873 - HP15_1238 0.12 -1.7
1,288,994 + HP15_1238 0.20 -0.1
1,288,999 + HP15_1238 0.20 -0.0
1,289,085 - HP15_1238 0.26 +0.0
1,289,240 - HP15_1238 0.36 -1.3
1,289,244 - HP15_1238 0.36 -0.8
1,289,508 - HP15_1238 0.53 -1.1
1,289,508 - HP15_1238 0.53 -0.6
1,289,553 + HP15_1238 0.56 -0.2
1,289,580 - HP15_1238 0.58 -0.9
1,289,672 + HP15_1238 0.64 +1.6
1,289,672 + HP15_1238 0.64 -1.4
1,289,738 - HP15_1238 0.69 -0.5
1,289,740 - HP15_1238 0.69 -0.2
1,289,796 - HP15_1238 0.72 -0.4
1,289,796 - HP15_1238 0.72 +0.6
1,289,877 + HP15_1238 0.78 -0.7
1,289,880 - HP15_1238 0.78 +1.1
1,289,972 + HP15_1238 0.84 +1.2
1,289,972 + HP15_1238 0.84 -1.0
1,289,980 - HP15_1238 0.84 -1.0
1,290,112 + -0.9
1,290,112 + +0.2
1,290,112 + -0.1
1,290,112 + -0.0
1,290,120 - +0.5
1,290,120 - -1.5
1,290,120 - +0.2
1,290,120 - +2.0
1,290,120 - -0.4
1,290,120 - +0.4
1,290,151 - +1.5
1,290,261 - +1.5
1,290,268 + -0.0
1,290,280 - -0.5
1,290,285 - -0.1
1,290,315 - +1.6
1,290,336 + +0.7
1,290,403 + +1.3
1,290,416 - +0.4

Or see this region's nucleotide sequence