Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1147 and HP15_1148 overlap by 4 nucleotides HP15_1148 and HP15_1149 are separated by 57 nucleotides
HP15_1147: HP15_1147 - glycosyltransferase involved in cell wall biogenesis, at 1,180,914 to 1,182,137
_1147
HP15_1148: HP15_1148 - alpha amylase, catalytic region, at 1,182,134 to 1,183,873
_1148
HP15_1149: HP15_1149 - quinone oxidoreductase putative, PIG3, at 1,183,931 to 1,184,923
_1149
Position (kb)
1182
1183
1184 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1181.135 kb on - strand, within HP15_1147 at 1181.194 kb on + strand, within HP15_1147 at 1181.194 kb on + strand, within HP15_1147 at 1181.195 kb on + strand, within HP15_1147 at 1181.324 kb on - strand, within HP15_1147 at 1181.385 kb on + strand, within HP15_1147 at 1181.399 kb on + strand, within HP15_1147 at 1181.399 kb on + strand, within HP15_1147 at 1181.500 kb on + strand, within HP15_1147 at 1181.577 kb on - strand, within HP15_1147 at 1181.610 kb on + strand, within HP15_1147 at 1181.618 kb on - strand, within HP15_1147 at 1181.818 kb on - strand, within HP15_1147 at 1181.864 kb on + strand, within HP15_1147 at 1182.188 kb on + strand at 1182.544 kb on + strand, within HP15_1148 at 1182.588 kb on + strand, within HP15_1148 at 1182.605 kb on + strand, within HP15_1148 at 1182.673 kb on + strand, within HP15_1148 at 1182.673 kb on + strand, within HP15_1148 at 1182.681 kb on - strand, within HP15_1148 at 1182.681 kb on - strand, within HP15_1148 at 1182.683 kb on + strand, within HP15_1148 at 1182.686 kb on - strand, within HP15_1148 at 1182.730 kb on + strand, within HP15_1148 at 1182.826 kb on + strand, within HP15_1148 at 1182.888 kb on + strand, within HP15_1148 at 1182.896 kb on - strand, within HP15_1148 at 1182.896 kb on - strand, within HP15_1148 at 1182.906 kb on - strand, within HP15_1148 at 1183.081 kb on + strand, within HP15_1148 at 1183.150 kb on + strand, within HP15_1148 at 1183.298 kb on + strand, within HP15_1148 at 1183.385 kb on - strand, within HP15_1148 at 1183.422 kb on + strand, within HP15_1148 at 1183.485 kb on + strand, within HP15_1148 at 1183.532 kb on + strand, within HP15_1148 at 1183.537 kb on - strand, within HP15_1148 at 1183.546 kb on + strand, within HP15_1148 at 1183.578 kb on + strand, within HP15_1148 at 1183.629 kb on + strand, within HP15_1148 at 1183.758 kb on + strand at 1183.821 kb on + strand at 1183.821 kb on + strand at 1183.829 kb on - strand at 1183.830 kb on - strand at 1183.847 kb on - strand at 1183.956 kb on - strand at 1184.068 kb on - strand, within HP15_1149 at 1184.068 kb on - strand, within HP15_1149 at 1184.154 kb on - strand, within HP15_1149 at 1184.174 kb on - strand, within HP15_1149 at 1184.182 kb on + strand, within HP15_1149 at 1184.552 kb on + strand, within HP15_1149 at 1184.570 kb on - strand, within HP15_1149 at 1184.592 kb on - strand, within HP15_1149 at 1184.642 kb on - strand, within HP15_1149 at 1184.793 kb on - strand, within HP15_1149 at 1184.793 kb on - strand, within HP15_1149 at 1184.851 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 1,181,135 - HP15_1147 0.18 +0.4 1,181,194 + HP15_1147 0.23 +0.7 1,181,194 + HP15_1147 0.23 -0.7 1,181,195 + HP15_1147 0.23 -0.3 1,181,324 - HP15_1147 0.33 -0.7 1,181,385 + HP15_1147 0.38 +1.5 1,181,399 + HP15_1147 0.40 -1.2 1,181,399 + HP15_1147 0.40 +0.8 1,181,500 + HP15_1147 0.48 -0.5 1,181,577 - HP15_1147 0.54 -1.1 1,181,610 + HP15_1147 0.57 +1.4 1,181,618 - HP15_1147 0.58 -0.3 1,181,818 - HP15_1147 0.74 -0.5 1,181,864 + HP15_1147 0.78 +1.0 1,182,188 + +0.4 1,182,544 + HP15_1148 0.24 +1.3 1,182,588 + HP15_1148 0.26 -1.8 1,182,605 + HP15_1148 0.27 +1.7 1,182,673 + HP15_1148 0.31 +2.3 1,182,673 + HP15_1148 0.31 -0.0 1,182,681 - HP15_1148 0.31 +1.4 1,182,681 - HP15_1148 0.31 -1.2 1,182,683 + HP15_1148 0.32 +2.0 1,182,686 - HP15_1148 0.32 +2.6 1,182,730 + HP15_1148 0.34 +2.0 1,182,826 + HP15_1148 0.40 +1.8 1,182,888 + HP15_1148 0.43 +2.8 1,182,896 - HP15_1148 0.44 -0.9 1,182,896 - HP15_1148 0.44 -0.8 1,182,906 - HP15_1148 0.44 +2.0 1,183,081 + HP15_1148 0.54 -0.3 1,183,150 + HP15_1148 0.58 +2.0 1,183,298 + HP15_1148 0.67 +1.5 1,183,385 - HP15_1148 0.72 -0.3 1,183,422 + HP15_1148 0.74 -0.1 1,183,485 + HP15_1148 0.78 +1.4 1,183,532 + HP15_1148 0.80 -1.5 1,183,537 - HP15_1148 0.81 -0.5 1,183,546 + HP15_1148 0.81 +1.8 1,183,578 + HP15_1148 0.83 +1.4 1,183,629 + HP15_1148 0.86 +0.7 1,183,758 + +1.1 1,183,821 + -1.5 1,183,821 + -0.6 1,183,829 - +1.7 1,183,830 - -0.5 1,183,847 - +0.7 1,183,956 - -0.3 1,184,068 - HP15_1149 0.14 +2.5 1,184,068 - HP15_1149 0.14 -1.3 1,184,154 - HP15_1149 0.22 +0.2 1,184,174 - HP15_1149 0.24 -0.3 1,184,182 + HP15_1149 0.25 +0.8 1,184,552 + HP15_1149 0.63 +2.2 1,184,570 - HP15_1149 0.64 +1.3 1,184,592 - HP15_1149 0.67 +2.3 1,184,642 - HP15_1149 0.72 +0.3 1,184,793 - HP15_1149 0.87 -0.3 1,184,793 - HP15_1149 0.87 +0.7 1,184,851 + -0.5
Or see this region's nucleotide sequence