Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1130 and HP15_1131 are separated by 60 nucleotides HP15_1131 and HP15_1132 are separated by 40 nucleotides
HP15_1130: HP15_1130 - transporter, BCCT family protein, at 1,158,308 to 1,159,900
_1130
HP15_1131: HP15_1131 - alpha-L-glutamate ligase-like protein, at 1,159,961 to 1,160,869
_1131
HP15_1132: HP15_1132 - gonadoliberin III-related protein, at 1,160,910 to 1,162,427
_1132
Position (kb)
1159
1160
1161 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1159.257 kb on - strand, within HP15_1130 at 1159.267 kb on - strand, within HP15_1130 at 1159.306 kb on + strand, within HP15_1130 at 1159.326 kb on - strand, within HP15_1130 at 1159.494 kb on + strand, within HP15_1130 at 1159.646 kb on + strand, within HP15_1130 at 1159.720 kb on + strand, within HP15_1130 at 1159.736 kb on + strand, within HP15_1130 at 1159.744 kb on - strand at 1159.758 kb on - strand at 1159.794 kb on + strand at 1159.807 kb on - strand at 1159.807 kb on - strand at 1159.896 kb on + strand at 1159.904 kb on - strand at 1160.007 kb on + strand at 1160.007 kb on + strand at 1160.015 kb on - strand at 1160.146 kb on + strand, within HP15_1131 at 1160.159 kb on - strand, within HP15_1131 at 1160.186 kb on + strand, within HP15_1131 at 1160.491 kb on - strand, within HP15_1131 at 1160.500 kb on + strand, within HP15_1131 at 1160.501 kb on + strand, within HP15_1131 at 1160.529 kb on - strand, within HP15_1131 at 1160.589 kb on - strand, within HP15_1131 at 1160.680 kb on - strand, within HP15_1131 at 1160.859 kb on + strand at 1160.975 kb on - strand at 1161.014 kb on - strand at 1161.075 kb on - strand, within HP15_1132 at 1161.076 kb on + strand, within HP15_1132 at 1161.084 kb on - strand, within HP15_1132 at 1161.192 kb on + strand, within HP15_1132 at 1161.231 kb on + strand, within HP15_1132 at 1161.306 kb on + strand, within HP15_1132 at 1161.376 kb on - strand, within HP15_1132 at 1161.524 kb on + strand, within HP15_1132 at 1161.524 kb on + strand, within HP15_1132 at 1161.571 kb on + strand, within HP15_1132 at 1161.701 kb on + strand, within HP15_1132 at 1161.709 kb on - strand, within HP15_1132 at 1161.788 kb on + strand, within HP15_1132 at 1161.854 kb on + strand, within HP15_1132 at 1161.854 kb on + strand, within HP15_1132
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 1,159,257 - HP15_1130 0.60 -0.8 1,159,267 - HP15_1130 0.60 +1.5 1,159,306 + HP15_1130 0.63 -0.7 1,159,326 - HP15_1130 0.64 -0.6 1,159,494 + HP15_1130 0.74 +2.0 1,159,646 + HP15_1130 0.84 -0.4 1,159,720 + HP15_1130 0.89 -0.6 1,159,736 + HP15_1130 0.90 +1.4 1,159,744 - -0.2 1,159,758 - -1.1 1,159,794 + -1.1 1,159,807 - +0.6 1,159,807 - +1.3 1,159,896 + +0.2 1,159,904 - +0.4 1,160,007 + +0.7 1,160,007 + -1.3 1,160,015 - -0.8 1,160,146 + HP15_1131 0.20 +1.3 1,160,159 - HP15_1131 0.22 +0.7 1,160,186 + HP15_1131 0.25 +1.0 1,160,491 - HP15_1131 0.58 -0.0 1,160,500 + HP15_1131 0.59 +1.0 1,160,501 + HP15_1131 0.59 +1.6 1,160,529 - HP15_1131 0.62 +1.3 1,160,589 - HP15_1131 0.69 +1.6 1,160,680 - HP15_1131 0.79 +1.0 1,160,859 + +1.0 1,160,975 - +0.0 1,161,014 - +1.0 1,161,075 - HP15_1132 0.11 -0.8 1,161,076 + HP15_1132 0.11 +1.0 1,161,084 - HP15_1132 0.11 +0.7 1,161,192 + HP15_1132 0.19 +1.6 1,161,231 + HP15_1132 0.21 +0.2 1,161,306 + HP15_1132 0.26 +1.5 1,161,376 - HP15_1132 0.31 -0.2 1,161,524 + HP15_1132 0.40 +0.0 1,161,524 + HP15_1132 0.40 -2.0 1,161,571 + HP15_1132 0.44 -0.4 1,161,701 + HP15_1132 0.52 -0.9 1,161,709 - HP15_1132 0.53 -0.6 1,161,788 + HP15_1132 0.58 +1.6 1,161,854 + HP15_1132 0.62 +1.1 1,161,854 + HP15_1132 0.62 +1.5
Or see this region's nucleotide sequence