Strain Fitness in Marinobacter adhaerens HP15 around HP15_1004

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1002 and HP15_1003 are separated by 2 nucleotidesHP15_1003 and HP15_1004 are separated by 14 nucleotidesHP15_1004 and HP15_1005 are separated by 207 nucleotides HP15_1002: HP15_1002 - methylcrotonyl-CoA carboxylase, alpha subunit, at 1,011,422 to 1,013,416 _1002 HP15_1003: HP15_1003 - enoyl-CoA hydratase/isomerase, at 1,013,419 to 1,014,225 _1003 HP15_1004: HP15_1004 - 3-methylcrotonyl CoA carboxylase, beta subunit, at 1,014,240 to 1,015,847 _1004 HP15_1005: HP15_1005 - acyl-CoA dehydrogenase domain protein, at 1,016,055 to 1,017,224 _1005 Position (kb) 1014 1015 1016Strain fitness (log2 ratio) -2 -1 0 1 2at 1014.142 kb on + strand, within HP15_1003at 1014.150 kb on - strandat 1014.166 kb on + strandat 1014.166 kb on + strandat 1014.299 kb on + strandat 1014.303 kb on - strandat 1014.307 kb on - strandat 1014.307 kb on - strandat 1014.321 kb on + strandat 1014.324 kb on - strandat 1014.329 kb on - strandat 1014.329 kb on - strandat 1014.334 kb on - strandat 1014.370 kb on + strandat 1014.374 kb on - strandat 1014.381 kb on + strandat 1014.381 kb on + strandat 1014.389 kb on + strandat 1014.389 kb on + strandat 1014.389 kb on - strandat 1014.389 kb on - strandat 1014.389 kb on - strandat 1014.517 kb on + strand, within HP15_1004at 1014.540 kb on + strand, within HP15_1004at 1014.544 kb on - strand, within HP15_1004at 1014.559 kb on - strand, within HP15_1004at 1014.632 kb on + strand, within HP15_1004at 1014.632 kb on + strand, within HP15_1004at 1014.642 kb on + strand, within HP15_1004at 1014.649 kb on + strand, within HP15_1004at 1014.714 kb on - strand, within HP15_1004at 1014.714 kb on - strand, within HP15_1004at 1014.877 kb on - strand, within HP15_1004at 1014.883 kb on - strand, within HP15_1004at 1014.910 kb on - strand, within HP15_1004at 1016.364 kb on - strand, within HP15_1005

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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1,014,142 + HP15_1003 0.90 -1.8
1,014,150 - -1.3
1,014,166 + -1.0
1,014,166 + +0.2
1,014,299 + -0.3
1,014,303 - +1.5
1,014,307 - -0.2
1,014,307 - +0.5
1,014,321 + +1.8
1,014,324 - -1.3
1,014,329 - +1.2
1,014,329 - -1.4
1,014,334 - -1.0
1,014,370 + -0.7
1,014,374 - +0.3
1,014,381 + +1.0
1,014,381 + -1.3
1,014,389 + -2.7
1,014,389 + +2.0
1,014,389 - -0.8
1,014,389 - +0.2
1,014,389 - -0.8
1,014,517 + HP15_1004 0.17 -1.6
1,014,540 + HP15_1004 0.19 +1.6
1,014,544 - HP15_1004 0.19 -1.2
1,014,559 - HP15_1004 0.20 +1.4
1,014,632 + HP15_1004 0.24 -0.3
1,014,632 + HP15_1004 0.24 -2.1
1,014,642 + HP15_1004 0.25 -0.3
1,014,649 + HP15_1004 0.25 +2.0
1,014,714 - HP15_1004 0.29 -0.3
1,014,714 - HP15_1004 0.29 -0.5
1,014,877 - HP15_1004 0.40 +1.2
1,014,883 - HP15_1004 0.40 -0.1
1,014,910 - HP15_1004 0.42 +0.9
1,016,364 - HP15_1005 0.26 +1.1

Or see this region's nucleotide sequence