Strain Fitness in Marinobacter adhaerens HP15 around HP15_1002

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1000 and HP15_1001 are separated by 14 nucleotidesHP15_1001 and HP15_1002 overlap by 1 nucleotidesHP15_1002 and HP15_1003 are separated by 2 nucleotidesHP15_1003 and HP15_1004 are separated by 14 nucleotides HP15_1000: HP15_1000 - uncharacterized peroxidase-related protein, at 1,009,927 to 1,010,502 _1000 HP15_1001: HP15_1001 - pyruvate carboxyltransferase, at 1,010,517 to 1,011,422 _1001 HP15_1002: HP15_1002 - methylcrotonyl-CoA carboxylase, alpha subunit, at 1,011,422 to 1,013,416 _1002 HP15_1003: HP15_1003 - enoyl-CoA hydratase/isomerase, at 1,013,419 to 1,014,225 _1003 HP15_1004: HP15_1004 - 3-methylcrotonyl CoA carboxylase, beta subunit, at 1,014,240 to 1,015,847 _1004 Position (kb) 1011 1012 1013 1014Strain fitness (log2 ratio) -2 -1 0 1 2at 1014.142 kb on + strand, within HP15_1003at 1014.150 kb on - strandat 1014.166 kb on + strandat 1014.166 kb on + strandat 1014.299 kb on + strandat 1014.303 kb on - strandat 1014.307 kb on - strandat 1014.307 kb on - strandat 1014.321 kb on + strandat 1014.324 kb on - strandat 1014.329 kb on - strandat 1014.329 kb on - strandat 1014.334 kb on - strandat 1014.370 kb on + strandat 1014.374 kb on - strandat 1014.381 kb on + strandat 1014.381 kb on + strandat 1014.389 kb on + strandat 1014.389 kb on + strandat 1014.389 kb on - strandat 1014.389 kb on - strandat 1014.389 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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1,014,142 + HP15_1003 0.90 -1.8
1,014,150 - -1.3
1,014,166 + -1.0
1,014,166 + +0.2
1,014,299 + -0.3
1,014,303 - +1.5
1,014,307 - -0.2
1,014,307 - +0.5
1,014,321 + +1.8
1,014,324 - -1.3
1,014,329 - +1.2
1,014,329 - -1.4
1,014,334 - -1.0
1,014,370 + -0.7
1,014,374 - +0.3
1,014,381 + +1.0
1,014,381 + -1.3
1,014,389 + -2.7
1,014,389 + +2.0
1,014,389 - -0.8
1,014,389 - +0.2
1,014,389 - -0.8

Or see this region's nucleotide sequence