Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001982

Experiment: Ammonium chloride 30 mM (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ammonium chloride 30 mM (N)
2,229,170	+				+0.5
2,229,170	+				-1.1
2,229,171	-				-2.0
2,229,171	-				+2.5
2,229,226	+				+1.5
2,229,226	+				-0.1
2,229,227	-				+0.9
2,229,227	-				-0.9
2,229,227	-				-1.7
2,229,227	-				-1.1
2,229,227	-				+0.5
2,229,236	+				-1.5
2,229,237	-				+0.5
2,229,237	-				-1.3
2,229,237	-				-1.9
2,229,286	-				-0.5
2,229,286	-				-0.1
2,229,286	-				-2.1
2,229,471	+		ABIE53_001980	0.41	+0.9
2,229,471	+		ABIE53_001980	0.41	+1.5
2,229,471	+		ABIE53_001980	0.41	-2.7
2,229,471	+		ABIE53_001980	0.41	-2.3
2,229,471	+		ABIE53_001980	0.41	-0.4
2,229,472	-		ABIE53_001980	0.41	-1.8
2,229,472	-		ABIE53_001980	0.41	+0.5
2,229,517	-		ABIE53_001980	0.54	-0.5
2,229,517	-		ABIE53_001980	0.54	-0.5
2,229,528	+		ABIE53_001980	0.58	-0.1
2,229,528	+		ABIE53_001980	0.58	-0.5
2,229,528	+		ABIE53_001980	0.58	-0.5
2,229,529	-		ABIE53_001980	0.58	+0.3
2,229,537	+		ABIE53_001980	0.60	-2.1
2,229,538	-		ABIE53_001980	0.61	+0.3
2,229,538	-		ABIE53_001980	0.61	-0.4
2,229,549	+		ABIE53_001980	0.64	+0.5
2,229,555	+		ABIE53_001980	0.66	+0.5
2,229,561	+		ABIE53_001980	0.67	-0.5
2,229,561	+		ABIE53_001980	0.67	-0.1
2,229,561	+		ABIE53_001980	0.67	-0.2
2,229,561	+		ABIE53_001980	0.67	+0.3
2,229,561	+		ABIE53_001980	0.67	+0.5
2,229,562	-		ABIE53_001980	0.68	+2.5
2,229,570	+		ABIE53_001980	0.70	+1.9
2,229,573	+		ABIE53_001980	0.71	-1.2
2,229,573	+		ABIE53_001980	0.71	-0.9
2,229,574	-		ABIE53_001980	0.71	-0.3
2,229,574	-		ABIE53_001980	0.71	+0.7
2,229,574	-		ABIE53_001980	0.71	+1.1
2,229,574	-		ABIE53_001980	0.71	-1.7
2,229,574	-		ABIE53_001980	0.71	-1.5
2,229,591	+		ABIE53_001980	0.76	+0.5
2,229,592	-		ABIE53_001980	0.76	+0.7
2,229,597	+		ABIE53_001980	0.78	+1.2
2,229,598	-		ABIE53_001980	0.78	+0.3
2,229,692	+				+0.0
2,229,692	+				+1.5
2,229,692	+				-0.8
2,229,692	+				-0.7
2,229,692	+				+2.1
2,229,692	+				+0.9
2,229,693	-				+2.3
2,229,693	-				-1.8
2,229,693	-				-1.2
2,229,693	-				+1.5
2,229,693	-				-0.0
2,229,693	-				+0.2
2,229,693	-				-0.7
2,229,693	-				+0.8
2,229,703	+				-0.2
2,229,704	-				+0.5
2,229,704	-				-2.0
2,229,742	+				-0.7
2,229,742	+				+0.3
2,229,742	+				+0.5
2,229,743	-				+0.2
2,229,743	-				-1.8
2,229,743	-				-1.2
2,229,759	+				+0.6
2,229,759	+				+0.5
2,229,779	+				+0.5
2,229,899	+		ABIE53_001981	0.57	+0.5
2,229,899	+		ABIE53_001981	0.57	-1.8
2,229,899	+		ABIE53_001981	0.57	-0.9
2,229,899	+		ABIE53_001981	0.57	-0.7
2,229,899	+		ABIE53_001981	0.57	-0.6
2,229,899	+		ABIE53_001981	0.57	-0.9
2,229,899	+		ABIE53_001981	0.57	+0.5
2,229,899	+		ABIE53_001981	0.57	+0.3
2,229,900	-		ABIE53_001981	0.57	-0.4
2,229,900	-		ABIE53_001981	0.57	-3.2
2,229,935	+		ABIE53_001981	0.74	+0.5
2,229,935	+		ABIE53_001981	0.74	+2.1
2,229,935	+		ABIE53_001981	0.74	+0.1
2,229,935	+		ABIE53_001981	0.74	-0.3
2,229,935	+		ABIE53_001981	0.74	-2.8
2,229,935	+		ABIE53_001981	0.74	+1.1
2,229,935	+		ABIE53_001981	0.74	+0.5
2,229,935	+		ABIE53_001981	0.74	-0.5
2,229,935	+		ABIE53_001981	0.74	-0.8
2,229,936	-		ABIE53_001981	0.74	+0.5
2,229,936	-		ABIE53_001981	0.74	+0.0
2,229,936	-		ABIE53_001981	0.74	-2.7
2,229,936	-		ABIE53_001981	0.74	+2.1
2,229,936	-		ABIE53_001981	0.74	-1.5
2,229,944	+		ABIE53_001981	0.78	+0.5
2,230,058	+				+0.4
2,230,058	+				-0.8
2,230,058	+				+0.5
2,230,059	-				+0.5
2,230,059	-				-0.7
2,230,059	-				+1.0
2,230,059	-				+0.7
2,230,059	-				-0.3
2,230,059	-				-0.3
2,230,103	+				-1.4
2,230,103	+				-0.0
2,230,103	+				-1.2
2,230,104	-				-1.1
2,230,111	+				+1.3
2,230,111	+				+0.5
2,230,111	+				+1.5
2,230,111	+				-0.8
2,230,111	+				-2.3
2,230,111	+				-1.3
2,230,111	+				+0.7
2,230,111	+				+0.5
2,230,111	+				-0.6
2,230,111	+				-0.5
2,230,111	+				-0.8
2,230,111	+				+1.5
2,230,111	+				-0.1
2,230,111	+				+0.2
2,230,111	+				+0.3
2,230,111	+				-1.1
2,230,112	-				+3.1
2,230,112	-				+1.6
2,230,112	-				+0.5
2,230,112	-				-0.1
2,230,112	-				+0.2
2,230,112	-				-1.2
2,230,112	-				-0.5
2,230,112	-				-2.1
2,230,112	-				+0.5
2,230,112	-				+2.8
2,230,121	-				-0.3
2,230,121	-				+0.5
2,230,139	+				-0.0
2,230,164	+				-0.7
2,230,164	+				+2.5
2,230,164	+				+0.5
2,230,164	+				-0.4
2,230,164	+				-1.6
2,230,164	+				-0.7
2,230,164	+				-0.7
2,230,165	-				+1.6
2,230,165	-				+2.5
2,230,165	-				+0.2
2,230,165	-				-0.8
2,230,165	-				-0.5
2,230,165	-				+0.5
2,230,165	-				-0.3
2,230,165	-				-1.5
2,230,165	-				+0.5
2,230,244	+		ABIE53_001982	0.11	+0.0
2,230,245	-		ABIE53_001982	0.11	+0.5
2,230,245	-		ABIE53_001982	0.11	+2.1
2,230,289	+		ABIE53_001982	0.15	-2.1
2,230,289	+		ABIE53_001982	0.15	+0.5
2,230,289	+		ABIE53_001982	0.15	-2.2
2,230,289	+		ABIE53_001982	0.15	+0.3
2,230,290	-		ABIE53_001982	0.15	+0.1
2,230,290	-		ABIE53_001982	0.15	-0.6
2,230,290	-		ABIE53_001982	0.15	-0.5
2,230,290	-		ABIE53_001982	0.15	-0.1
2,230,290	-		ABIE53_001982	0.15	+0.6
2,230,290	-		ABIE53_001982	0.15	-1.8
2,230,290	-		ABIE53_001982	0.15	+0.8
2,230,290	-		ABIE53_001982	0.15	+0.1
2,230,290	-		ABIE53_001982	0.15	-1.3
2,230,336	+		ABIE53_001982	0.19	-1.1
2,230,435	+		ABIE53_001982	0.29	-0.2
2,230,499	-		ABIE53_001982	0.35	-0.2
2,230,517	+		ABIE53_001982	0.36	-0.3
2,230,518	-		ABIE53_001982	0.37	+0.0
2,230,529	+		ABIE53_001982	0.38	-0.1
2,230,530	-		ABIE53_001982	0.38	+3.5
2,230,530	-		ABIE53_001982	0.38	-2.3
2,230,530	-		ABIE53_001982	0.38	-0.5
2,230,581	-		ABIE53_001982	0.43	+0.4
2,230,581	-		ABIE53_001982	0.43	+1.1
2,230,601	+		ABIE53_001982	0.44	-0.6
2,230,601	+		ABIE53_001982	0.44	-0.4
2,230,601	+		ABIE53_001982	0.44	+1.7
2,230,601	+		ABIE53_001982	0.44	-0.5
2,230,601	+		ABIE53_001982	0.44	-1.5
2,230,601	+		ABIE53_001982	0.44	+0.1
2,230,601	+		ABIE53_001982	0.44	+1.1
2,230,602	-		ABIE53_001982	0.45	+0.1
2,230,602	-		ABIE53_001982	0.45	-0.7
2,230,602	-		ABIE53_001982	0.45	-0.7
2,230,613	-		ABIE53_001982	0.46	-1.8
2,230,753	+		ABIE53_001982	0.59	-2.1
2,230,753	+		ABIE53_001982	0.59	+0.5
2,230,753	+		ABIE53_001982	0.59	+0.5
2,230,754	-		ABIE53_001982	0.59	-1.3
2,230,766	+		ABIE53_001982	0.60	-0.5
2,230,766	+		ABIE53_001982	0.60	+0.9
2,230,778	-		ABIE53_001982	0.61	+2.8
2,230,778	-		ABIE53_001982	0.61	-1.0
2,230,787	+		ABIE53_001982	0.62	+1.5
2,230,787	+		ABIE53_001982	0.62	+1.5
2,230,787	+		ABIE53_001982	0.62	+2.5
2,230,787	+		ABIE53_001982	0.62	-1.5
2,230,787	+		ABIE53_001982	0.62	-1.6
2,230,788	-		ABIE53_001982	0.62	+0.6
2,230,788	-		ABIE53_001982	0.62	-0.7
2,230,788	-		ABIE53_001982	0.62	+0.5
2,230,788	-		ABIE53_001982	0.62	+2.2
2,230,877	+		ABIE53_001982	0.71	+0.5
2,230,877	+		ABIE53_001982	0.71	-0.0
2,230,877	+		ABIE53_001982	0.71	-0.1
2,230,877	+		ABIE53_001982	0.71	-1.3
2,230,877	+		ABIE53_001982	0.71	-0.4
2,230,877	+		ABIE53_001982	0.71	+0.5
2,230,877	+		ABIE53_001982	0.71	-1.8
2,230,877	+		ABIE53_001982	0.71	+0.9
2,230,877	+		ABIE53_001982	0.71	+0.5
2,230,877	+		ABIE53_001982	0.71	-1.0
2,230,877	+		ABIE53_001982	0.71	+1.1
2,230,877	+		ABIE53_001982	0.71	-0.4
2,230,877	+		ABIE53_001982	0.71	-1.5
2,230,877	+		ABIE53_001982	0.71	-0.4
2,230,877	+		ABIE53_001982	0.71	+0.4
2,230,877	+		ABIE53_001982	0.71	-1.3
2,230,877	+		ABIE53_001982	0.71	+1.2
2,230,878	-		ABIE53_001982	0.71	+2.1
2,230,878	-		ABIE53_001982	0.71	-0.1
2,230,878	-		ABIE53_001982	0.71	-0.5
2,230,878	-		ABIE53_001982	0.71	-0.3
2,230,878	-		ABIE53_001982	0.71	+1.2
2,230,878	-		ABIE53_001982	0.71	+1.5
2,230,878	-		ABIE53_001982	0.71	-0.8
2,230,878	-		ABIE53_001982	0.71	-0.5
2,230,878	-		ABIE53_001982	0.71	+0.5
2,230,878	-		ABIE53_001982	0.71	-0.5
2,230,878	-		ABIE53_001982	0.71	+0.8
2,230,937	+		ABIE53_001982	0.76	-0.1
2,230,938	-		ABIE53_001982	0.76	+0.5
2,230,938	-		ABIE53_001982	0.76	-0.3
2,230,973	+		ABIE53_001982	0.80	+1.4
2,230,973	+		ABIE53_001982	0.80	+0.1
2,230,974	-		ABIE53_001982	0.80	-3.4
2,230,974	-		ABIE53_001982	0.80	+1.5
2,231,243	+				-0.2
2,231,243	+				+2.1
2,231,243	+				+3.7
2,231,243	+				+0.7
2,231,243	+				+1.1
2,231,243	+				-1.2
2,231,243	+				-1.3
2,231,243	+				+2.8
2,231,243	+				-1.3
2,231,244	-				+0.4
2,231,244	-				+0.5
2,231,244	-				-1.1
2,231,244	-				-0.4
2,231,260	+				-2.7
2,231,260	+				-1.2
2,231,261	-				-0.7
2,231,277	+				-0.1
2,231,277	+				+1.5
2,231,277	+				+1.5
2,231,278	-				-0.6
2,231,291	+				-0.0
2,231,291	+				-0.4
2,231,291	+				-1.2
2,231,291	+				+0.4
2,231,291	+				-2.1
2,231,291	+				+0.4
2,231,292	-				+0.5
2,231,292	-				+0.4
2,231,292	-				+0.5
2,231,292	-				-2.3
2,231,542	+		ABIE53_001983	0.34	+0.8
2,231,543	-		ABIE53_001983	0.35	+0.5
2,231,543	-		ABIE53_001983	0.35	-1.4
2,231,543	-		ABIE53_001983	0.35	-0.1
2,231,580	+		ABIE53_001983	0.43	-1.2
2,231,580	+		ABIE53_001983	0.43	-1.4
2,231,580	+		ABIE53_001983	0.43	-1.4
2,231,581	-		ABIE53_001983	0.43	+0.5
2,231,581	-		ABIE53_001983	0.43	-1.5
2,231,581	-		ABIE53_001983	0.43	-1.2
2,231,777	+				-1.6
2,231,903	-				-1.3
2,231,959	+				+0.3
2,231,960	-				-2.2
2,231,993	+		ABIE53_001984	0.11	+2.1
2,232,054	+		ABIE53_001984	0.18	+0.8
2,232,054	+		ABIE53_001984	0.18	+0.7
2,232,054	+		ABIE53_001984	0.18	-0.3
2,232,054	+		ABIE53_001984	0.18	+0.0
2,232,054	+		ABIE53_001984	0.18	-2.1
2,232,054	+		ABIE53_001984	0.18	+1.8
2,232,055	-		ABIE53_001984	0.19	+0.5
2,232,055	-		ABIE53_001984	0.19	+1.7
2,232,055	-		ABIE53_001984	0.19	+0.5
2,232,055	-		ABIE53_001984	0.19	-0.9
2,232,149	-		ABIE53_001984	0.30	+1.5
2,232,149	-		ABIE53_001984	0.30	-0.5
2,232,166	+		ABIE53_001984	0.32	+1.5