Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0637

Experiment: Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0636 and DVU0637 are separated by 279 nucleotidesDVU0637 and DVU0638 are separated by 132 nucleotides DVU0636: DVU0636 - response regulator/GGDEF domain protein (TIGR), at 704,799 to 706,112 DVU0636 DVU0637: DVU0637 - conserved hypothetical protein (TIGR), at 706,392 to 707,780 DVU0637 DVU0638: DVU0638 - membrane protein, putative (TIGR), at 707,913 to 708,779 DVU0638 Position (kb) 706 707 708Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 705.400 kb on - strand, within DVU0636at 705.419 kb on + strand, within DVU0636at 705.508 kb on - strand, within DVU0636at 705.516 kb on + strand, within DVU0636at 705.540 kb on - strand, within DVU0636at 705.547 kb on + strand, within DVU0636at 705.592 kb on - strand, within DVU0636at 705.645 kb on + strand, within DVU0636at 705.711 kb on - strand, within DVU0636at 705.740 kb on + strand, within DVU0636at 705.750 kb on + strand, within DVU0636at 705.837 kb on - strand, within DVU0636at 705.842 kb on - strand, within DVU0636at 705.853 kb on + strand, within DVU0636at 705.861 kb on - strand, within DVU0636at 705.861 kb on - strand, within DVU0636at 705.874 kb on + strand, within DVU0636at 705.883 kb on + strand, within DVU0636at 705.891 kb on - strand, within DVU0636at 705.891 kb on - strand, within DVU0636at 705.971 kb on - strand, within DVU0636at 705.998 kb on + strandat 706.042 kb on + strandat 706.055 kb on + strandat 706.057 kb on + strandat 706.063 kb on - strandat 706.071 kb on + strandat 706.124 kb on - strandat 706.202 kb on + strandat 706.208 kb on - strandat 706.208 kb on - strandat 706.313 kb on - strandat 706.323 kb on - strandat 706.336 kb on + strandat 706.351 kb on + strandat 706.359 kb on - strandat 706.389 kb on + strandat 706.430 kb on - strandat 706.432 kb on + strandat 706.458 kb on - strandat 706.476 kb on + strandat 706.490 kb on - strandat 706.567 kb on + strand, within DVU0637at 706.567 kb on + strand, within DVU0637at 706.567 kb on + strand, within DVU0637at 706.567 kb on + strand, within DVU0637at 706.575 kb on - strand, within DVU0637at 706.575 kb on - strand, within DVU0637at 706.575 kb on - strand, within DVU0637at 706.575 kb on - strand, within DVU0637at 706.591 kb on + strand, within DVU0637at 706.769 kb on - strand, within DVU0637at 706.853 kb on + strand, within DVU0637at 706.906 kb on + strand, within DVU0637at 706.906 kb on + strand, within DVU0637at 706.927 kb on - strand, within DVU0637at 706.935 kb on - strand, within DVU0637at 706.961 kb on + strand, within DVU0637at 706.967 kb on + strand, within DVU0637at 707.141 kb on - strand, within DVU0637at 707.175 kb on + strand, within DVU0637at 707.188 kb on - strand, within DVU0637at 707.303 kb on + strand, within DVU0637at 707.311 kb on - strand, within DVU0637at 707.363 kb on - strand, within DVU0637at 707.488 kb on - strand, within DVU0637at 707.558 kb on + strand, within DVU0637at 707.608 kb on - strand, within DVU0637at 707.774 kb on + strandat 707.784 kb on - strandat 707.849 kb on + strandat 707.857 kb on - strandat 707.867 kb on - strandat 707.983 kb on - strandat 707.983 kb on - strandat 708.056 kb on - strand, within DVU0638at 708.069 kb on - strand, within DVU0638at 708.099 kb on - strand, within DVU0638at 708.155 kb on + strand, within DVU0638at 708.174 kb on - strand, within DVU0638at 708.238 kb on + strand, within DVU0638at 708.334 kb on - strand, within DVU0638at 708.426 kb on + strand, within DVU0638at 708.449 kb on + strand, within DVU0638at 708.449 kb on + strand, within DVU0638at 708.449 kb on + strand, within DVU0638at 708.449 kb on + strand, within DVU0638at 708.457 kb on - strand, within DVU0638at 708.457 kb on - strand, within DVU0638at 708.457 kb on - strand, within DVU0638at 708.457 kb on - strand, within DVU0638at 708.484 kb on + strand, within DVU0638at 708.492 kb on - strand, within DVU0638at 708.512 kb on - strand, within DVU0638at 708.556 kb on - strand, within DVU0638at 708.742 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract
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705,400 - DVU0636 0.46 -1.0
705,419 + DVU0636 0.47 -0.4
705,508 - DVU0636 0.54 -0.2
705,516 + DVU0636 0.55 -0.0
705,540 - DVU0636 0.56 +0.3
705,547 + DVU0636 0.57 +0.2
705,592 - DVU0636 0.60 +0.9
705,645 + DVU0636 0.64 +1.1
705,711 - DVU0636 0.69 +0.1
705,740 + DVU0636 0.72 +1.6
705,750 + DVU0636 0.72 -0.9
705,837 - DVU0636 0.79 -0.1
705,842 - DVU0636 0.79 -0.3
705,853 + DVU0636 0.80 +0.1
705,861 - DVU0636 0.81 -0.1
705,861 - DVU0636 0.81 -0.9
705,874 + DVU0636 0.82 -1.3
705,883 + DVU0636 0.82 +0.1
705,891 - DVU0636 0.83 -0.0
705,891 - DVU0636 0.83 +1.2
705,971 - DVU0636 0.89 -0.8
705,998 + +0.2
706,042 + -0.9
706,055 + +0.2
706,057 + -0.1
706,063 - -2.1
706,071 + -0.6
706,124 - +0.7
706,202 + +1.9
706,208 - -0.8
706,208 - -0.8
706,313 - -0.9
706,323 - +0.1
706,336 + -0.7
706,351 + -2.0
706,359 - +1.0
706,389 + -0.4
706,430 - -0.4
706,432 + -1.7
706,458 - +0.2
706,476 + +0.7
706,490 - -0.4
706,567 + DVU0637 0.13 +1.4
706,567 + DVU0637 0.13 +0.7
706,567 + DVU0637 0.13 +0.4
706,567 + DVU0637 0.13 +1.0
706,575 - DVU0637 0.13 +1.0
706,575 - DVU0637 0.13 +0.3
706,575 - DVU0637 0.13 -0.2
706,575 - DVU0637 0.13 +0.1
706,591 + DVU0637 0.14 +0.2
706,769 - DVU0637 0.27 +0.4
706,853 + DVU0637 0.33 +0.4
706,906 + DVU0637 0.37 +0.3
706,906 + DVU0637 0.37 +0.5
706,927 - DVU0637 0.39 -0.5
706,935 - DVU0637 0.39 +1.6
706,961 + DVU0637 0.41 -0.7
706,967 + DVU0637 0.41 +0.4
707,141 - DVU0637 0.54 +0.1
707,175 + DVU0637 0.56 -1.1
707,188 - DVU0637 0.57 -0.4
707,303 + DVU0637 0.66 +2.1
707,311 - DVU0637 0.66 +0.3
707,363 - DVU0637 0.70 +0.1
707,488 - DVU0637 0.79 +1.1
707,558 + DVU0637 0.84 +0.4
707,608 - DVU0637 0.88 +0.2
707,774 + -0.3
707,784 - -0.1
707,849 + +1.2
707,857 - +0.1
707,867 - +0.6
707,983 - -2.0
707,983 - -0.3
708,056 - DVU0638 0.16 -0.4
708,069 - DVU0638 0.18 -0.4
708,099 - DVU0638 0.21 -1.9
708,155 + DVU0638 0.28 -1.4
708,174 - DVU0638 0.30 -0.6
708,238 + DVU0638 0.37 -0.5
708,334 - DVU0638 0.49 -1.1
708,426 + DVU0638 0.59 -0.9
708,449 + DVU0638 0.62 -1.4
708,449 + DVU0638 0.62 -0.5
708,449 + DVU0638 0.62 -3.6
708,449 + DVU0638 0.62 -1.2
708,457 - DVU0638 0.63 -0.8
708,457 - DVU0638 0.63 -0.7
708,457 - DVU0638 0.63 -0.1
708,457 - DVU0638 0.63 -0.2
708,484 + DVU0638 0.66 -1.0
708,492 - DVU0638 0.67 -1.0
708,512 - DVU0638 0.69 -0.5
708,556 - DVU0638 0.74 -2.8
708,742 + -0.7

Or see this region's nucleotide sequence