Experiment: Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0346 and DVU0347 are separated by 295 nucleotides DVU0347 and DVU0348 are separated by 18 nucleotides
DVU0346: DVU0346 - membrane protein, putative (TIGR), at 391,830 to 393,368
DVU0346
DVU0347: DVU0347 - transferase, hexapeptide repeat family (TIGR), at 393,664 to 394,335
DVU0347
DVU0348: DVU0348 - hypothetical protein (TIGR), at 394,354 to 396,078
DVU0348
Position (kb) 393
394
395 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 393.374 kb on + strand at 393.409 kb on - strand at 393.416 kb on + strand at 393.481 kb on + strand at 393.559 kb on - strand at 393.566 kb on + strand at 393.566 kb on + strand at 393.574 kb on - strand at 393.574 kb on - strand at 393.592 kb on + strand at 393.592 kb on + strand at 393.600 kb on - strand at 393.600 kb on - strand at 393.600 kb on - strand at 393.696 kb on - strand at 393.779 kb on - strand, within DVU0347 at 393.789 kb on - strand, within DVU0347 at 393.792 kb on - strand, within DVU0347 at 393.809 kb on - strand, within DVU0347 at 393.859 kb on + strand, within DVU0347 at 393.867 kb on - strand, within DVU0347 at 393.876 kb on - strand, within DVU0347 at 394.039 kb on - strand, within DVU0347 at 394.118 kb on - strand, within DVU0347 at 394.209 kb on + strand, within DVU0347 at 394.226 kb on - strand, within DVU0347 at 394.281 kb on + strand at 394.309 kb on - strand at 394.319 kb on - strand at 394.384 kb on - strand at 394.385 kb on - strand at 394.459 kb on + strand at 394.468 kb on + strand at 394.476 kb on - strand at 394.555 kb on - strand, within DVU0348 at 394.598 kb on + strand, within DVU0348 at 394.636 kb on - strand, within DVU0348 at 394.646 kb on - strand, within DVU0348 at 394.646 kb on - strand, within DVU0348 at 394.646 kb on - strand, within DVU0348 at 394.684 kb on + strand, within DVU0348 at 394.709 kb on + strand, within DVU0348 at 394.722 kb on - strand, within DVU0348 at 394.781 kb on - strand, within DVU0348 at 394.789 kb on + strand, within DVU0348 at 394.789 kb on + strand, within DVU0348 at 394.797 kb on - strand, within DVU0348 at 394.816 kb on + strand, within DVU0348 at 394.819 kb on - strand, within DVU0348 at 394.821 kb on + strand, within DVU0348 at 394.823 kb on + strand, within DVU0348 at 394.878 kb on + strand, within DVU0348 at 394.882 kb on + strand, within DVU0348 at 394.889 kb on + strand, within DVU0348 at 394.904 kb on + strand, within DVU0348 at 394.912 kb on - strand, within DVU0348 at 394.991 kb on + strand, within DVU0348 at 394.991 kb on + strand, within DVU0348 at 395.024 kb on + strand, within DVU0348 at 395.092 kb on - strand, within DVU0348 at 395.185 kb on - strand, within DVU0348 at 395.225 kb on + strand, within DVU0348 at 395.286 kb on - strand, within DVU0348
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract remove 393,374 + +0.7 393,409 - +0.2 393,416 + +0.6 393,481 + -1.4 393,559 - +1.5 393,566 + +0.8 393,566 + -0.5 393,574 - +1.3 393,574 - +0.2 393,592 + -0.4 393,592 + -0.1 393,600 - -0.4 393,600 - +0.5 393,600 - -2.2 393,696 - -0.0 393,779 - DVU0347 0.17 -0.2 393,789 - DVU0347 0.19 -0.5 393,792 - DVU0347 0.19 -0.8 393,809 - DVU0347 0.22 -0.9 393,859 + DVU0347 0.29 -0.5 393,867 - DVU0347 0.30 -1.1 393,876 - DVU0347 0.32 -0.7 394,039 - DVU0347 0.56 -0.7 394,118 - DVU0347 0.68 -0.0 394,209 + DVU0347 0.81 +1.3 394,226 - DVU0347 0.84 +0.3 394,281 + -0.9 394,309 - +0.6 394,319 - +0.4 394,384 - -1.6 394,385 - -1.5 394,459 + -2.4 394,468 + -1.9 394,476 - -1.8 394,555 - DVU0348 0.12 +0.2 394,598 + DVU0348 0.14 -2.3 394,636 - DVU0348 0.16 -2.4 394,646 - DVU0348 0.17 -1.4 394,646 - DVU0348 0.17 -1.8 394,646 - DVU0348 0.17 -1.4 394,684 + DVU0348 0.19 -3.6 394,709 + DVU0348 0.21 -1.5 394,722 - DVU0348 0.21 -2.5 394,781 - DVU0348 0.25 -1.4 394,789 + DVU0348 0.25 -1.9 394,789 + DVU0348 0.25 -1.7 394,797 - DVU0348 0.26 -1.0 394,816 + DVU0348 0.27 -0.4 394,819 - DVU0348 0.27 -2.6 394,821 + DVU0348 0.27 -2.0 394,823 + DVU0348 0.27 -2.3 394,878 + DVU0348 0.30 -1.8 394,882 + DVU0348 0.31 -2.0 394,889 + DVU0348 0.31 -2.2 394,904 + DVU0348 0.32 -2.7 394,912 - DVU0348 0.32 -1.7 394,991 + DVU0348 0.37 -1.4 394,991 + DVU0348 0.37 -3.0 395,024 + DVU0348 0.39 -1.7 395,092 - DVU0348 0.43 -1.8 395,185 - DVU0348 0.48 -2.1 395,225 + DVU0348 0.50 -2.5 395,286 - DVU0348 0.54 -1.1
Or see this region's nucleotide sequence