Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1474

Experiment: Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1472 and DORF11409 are separated by 321 nucleotidesDORF11409 and DVU1474 are separated by 43 nucleotidesDVU1474 and DVU1475 are separated by 282 nucleotides DVU1472: DVU1472 - ATP-dependent protease, putative (TIGR), at 1,552,089 to 1,554,554 DVU1472 DORF11409: DORF11409 - SEED: FIG00606517: hypothetical protein, at 1,554,876 to 1,555,124 DORF11409 DVU1474: DVU1474 - hypothetical protein (TIGR), at 1,555,168 to 1,555,281 DVU1474 DVU1475: DVU1475 - PhoU family protein (TIGR), at 1,555,564 to 1,556,241 DVU1475 Position (kb) 1555 1556Strain fitness (log2 ratio) -1 0 1at 1554.169 kb on + strand, within DVU1472at 1554.175 kb on - strand, within DVU1472at 1554.212 kb on + strand, within DVU1472at 1554.275 kb on + strand, within DVU1472at 1554.283 kb on + strand, within DVU1472at 1554.287 kb on - strand, within DVU1472at 1554.445 kb on - strandat 1554.556 kb on - strandat 1554.556 kb on - strandat 1554.615 kb on - strandat 1554.842 kb on - strandat 1554.988 kb on - strand, within DORF11409at 1554.988 kb on - strand, within DORF11409at 1555.015 kb on + strand, within DORF11409at 1555.134 kb on + strandat 1555.354 kb on - strandat 1555.425 kb on + strandat 1555.484 kb on + strandat 1555.637 kb on + strand, within DVU1475at 1555.637 kb on + strand, within DVU1475at 1556.058 kb on + strand, within DVU1475at 1556.071 kb on - strand, within DVU1475at 1556.146 kb on - strand, within DVU1475at 1556.187 kb on - strandat 1556.268 kb on - strandat 1556.278 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract
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1,554,169 + DVU1472 0.84 -0.0
1,554,175 - DVU1472 0.85 -0.3
1,554,212 + DVU1472 0.86 +0.0
1,554,275 + DVU1472 0.89 +0.4
1,554,283 + DVU1472 0.89 +0.8
1,554,287 - DVU1472 0.89 -0.1
1,554,445 - -0.2
1,554,556 - -1.2
1,554,556 - -0.4
1,554,615 - -0.0
1,554,842 - -0.2
1,554,988 - DORF11409 0.45 -1.3
1,554,988 - DORF11409 0.45 -1.4
1,555,015 + DORF11409 0.56 +0.3
1,555,134 + +0.9
1,555,354 - -0.4
1,555,425 + +0.1
1,555,484 + -0.6
1,555,637 + DVU1475 0.11 +1.4
1,555,637 + DVU1475 0.11 -0.4
1,556,058 + DVU1475 0.73 -0.1
1,556,071 - DVU1475 0.75 +0.5
1,556,146 - DVU1475 0.86 +0.4
1,556,187 - -0.8
1,556,268 - -0.6
1,556,278 - +0.6

Or see this region's nucleotide sequence