Strain Fitness in Shewanella oneidensis MR-1 around SO0650

Experiment: 20 mM D,L-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0648 and SO0649 are separated by 18 nucleotidesSO0649 and SO0650 are separated by 102 nucleotidesSO0650 and SO0651 overlap by 1 nucleotidesSO0651 and SO0652 overlap by 8 nucleotides SO0648: SO0648 - conserved hypothetical protein (NCBI ptt file), at 674,729 to 675,355 SO0648 SO0649: SO0649 - hypothetical protein (NCBI ptt file), at 675,374 to 675,646 SO0649 SO0650: SO0650 - hypothetical protein (NCBI ptt file), at 675,749 to 675,979 SO0650 SO0651: SO0651 - conserved hypothetical protein (NCBI ptt file), at 675,979 to 676,584 SO0651 SO0652: SO0652 - prophage MuSo1, positive regulator of late transcription, putative (NCBI ptt file), at 676,577 to 677,032 SO0652 Position (kb) 675 676Strain fitness (log2 ratio) -2 -1 0 1 2at 674.828 kb on - strand, within SO0648at 674.850 kb on - strand, within SO0648at 674.900 kb on - strand, within SO0648at 674.938 kb on + strand, within SO0648at 674.943 kb on + strand, within SO0648at 674.948 kb on + strand, within SO0648at 674.958 kb on - strand, within SO0648at 675.012 kb on + strand, within SO0648at 675.045 kb on + strand, within SO0648at 675.147 kb on + strand, within SO0648at 675.302 kb on + strandat 675.345 kb on - strandat 675.350 kb on + strandat 675.365 kb on - strandat 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strandat 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.465 kb on - strand, within SO0649at 675.476 kb on + strand, within SO0649at 675.476 kb on + strand, within SO0649at 675.484 kb on - strand, within SO0649at 675.484 kb on - strand, within SO0649at 675.515 kb on + strand, within SO0649at 675.525 kb on - strand, within SO0649at 675.537 kb on + strand, within SO0649at 675.547 kb on + strand, within SO0649at 675.658 kb on - strandat 675.683 kb on + strandat 675.691 kb on - strandat 675.701 kb on + strandat 675.739 kb on - strandat 675.739 kb on - strandat 675.818 kb on + strand, within SO0650at 675.818 kb on + strand, within SO0650at 675.818 kb on + strand, within SO0650at 675.818 kb on + strand, within SO0650at 675.826 kb on - strand, within SO0650at 675.826 kb on - strand, within SO0650at 675.905 kb on + strand, within SO0650at 675.916 kb on + strand, within SO0650at 675.916 kb on + strand, within SO0650at 675.916 kb on + strand, within SO0650at 675.924 kb on - strand, within SO0650at 676.016 kb on + strandat 676.023 kb on - strandat 676.024 kb on - strandat 676.087 kb on - strand, within SO0651at 676.276 kb on + strand, within SO0651at 676.276 kb on + strand, within SO0651at 676.284 kb on - strand, within SO0651at 676.284 kb on - strand, within SO0651at 676.291 kb on + strand, within SO0651at 676.298 kb on + strand, within SO0651at 676.311 kb on + strand, within SO0651at 676.319 kb on - strand, within SO0651at 676.334 kb on + strand, within SO0651at 676.354 kb on + strand, within SO0651at 676.368 kb on + strand, within SO0651at 676.419 kb on + strand, within SO0651at 676.443 kb on - strand, within SO0651at 676.550 kb on + strandat 676.550 kb on + strandat 676.558 kb on - strandat 676.558 kb on - strandat 676.560 kb on + strandat 676.560 kb on + strandat 676.568 kb on - strandat 676.568 kb on - strandat 676.568 kb on - strandat 676.568 kb on - strandat 676.641 kb on - strand, within SO0652at 676.671 kb on - strand, within SO0652at 676.694 kb on - strand, within SO0652at 676.745 kb on + strand, within SO0652at 676.761 kb on + strand, within SO0652at 676.761 kb on + strand, within SO0652at 676.769 kb on - strand, within SO0652at 676.795 kb on + strand, within SO0652at 676.800 kb on + strand, within SO0652at 676.830 kb on + strand, within SO0652at 676.832 kb on - strand, within SO0652at 676.849 kb on + strand, within SO0652at 676.855 kb on + strand, within SO0652at 676.862 kb on + strand, within SO0652at 676.862 kb on + strand, within SO0652at 676.870 kb on + strand, within SO0652at 676.870 kb on + strand, within SO0652at 676.870 kb on + strand, within SO0652at 676.875 kb on + strand, within SO0652at 676.878 kb on - strand, within SO0652at 676.909 kb on + strand, within SO0652at 676.916 kb on - strand, within SO0652at 676.918 kb on + strand, within SO0652at 676.931 kb on - strand, within SO0652at 676.944 kb on + strand, within SO0652at 676.944 kb on + strand, within SO0652at 676.950 kb on + strand, within SO0652at 676.950 kb on + strand, within SO0652at 676.950 kb on + strand, within SO0652at 676.950 kb on + strand, within SO0652at 676.950 kb on + strand, within SO0652at 676.950 kb on + strand, within SO0652at 676.952 kb on - strand, within SO0652at 676.952 kb on - strand, within SO0652at 676.952 kb on - strand, within SO0652at 676.952 kb on - strand, within SO0652at 676.958 kb on - strand, within SO0652at 676.958 kb on - strand, within SO0652at 676.975 kb on + strand, within SO0652at 676.979 kb on - strand, within SO0652

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Per-strain Table

Position Strand Gene LocusTag Fraction 20 mM D,L-Lactate
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674,828 - SO0648 0.16 +0.8
674,850 - SO0648 0.19 +0.1
674,900 - SO0648 0.27 +1.1
674,938 + SO0648 0.33 +0.3
674,943 + SO0648 0.34 +0.6
674,948 + SO0648 0.35 +0.7
674,958 - SO0648 0.37 +0.2
675,012 + SO0648 0.45 -0.1
675,045 + SO0648 0.50 +1.1
675,147 + SO0648 0.67 +0.8
675,302 + +0.3
675,345 - -0.6
675,350 + +1.5
675,365 - -0.1
675,416 + SO0649 0.15 -0.7
675,416 + SO0649 0.15 +1.4
675,416 + SO0649 0.15 +0.3
675,416 + -1.1
675,416 + SO0649 0.15 +1.1
675,416 + SO0649 0.15 +0.8
675,416 + SO0649 0.15 -0.6
675,416 + SO0649 0.15 +1.7
675,416 + SO0649 0.15 +0.9
675,416 + SO0649 0.15 +0.4
675,416 + SO0649 0.15 +0.8
675,416 + SO0649 0.15 +0.3
675,416 + SO0649 0.15 -0.2
675,416 + SO0649 0.15 -0.2
675,416 + SO0649 0.15 -0.3
675,416 + SO0649 0.15 +0.4
675,416 + SO0649 0.15 +0.8
675,416 + SO0649 0.15 +0.3
675,416 + SO0649 0.15 +0.5
675,416 + SO0649 0.15 +0.1
675,416 + SO0649 0.15 +0.3
675,416 + SO0649 0.15 +1.2
675,424 - SO0649 0.18 -0.0
675,424 - SO0649 0.18 +0.5
675,424 - SO0649 0.18 +0.5
675,424 - SO0649 0.18 +0.3
675,424 - SO0649 0.18 -1.0
675,424 - SO0649 0.18 +0.3
675,424 - SO0649 0.18 +0.4
675,424 - SO0649 0.18 -0.9
675,424 - SO0649 0.18 +0.1
675,424 - SO0649 0.18 -1.5
675,424 - SO0649 0.18 -0.5
675,424 - SO0649 0.18 +1.1
675,424 - SO0649 0.18 +1.1
675,424 - SO0649 0.18 +0.1
675,424 - SO0649 0.18 +0.4
675,424 - SO0649 0.18 +1.1
675,424 - SO0649 0.18 +0.3
675,424 - SO0649 0.18 +0.2
675,424 - SO0649 0.18 +0.8
675,424 - SO0649 0.18 +0.1
675,424 - SO0649 0.18 +0.1
675,465 - SO0649 0.33 +1.1
675,476 + SO0649 0.37 +1.0
675,476 + SO0649 0.37 +0.7
675,484 - SO0649 0.40 -0.1
675,484 - SO0649 0.40 -0.8
675,515 + SO0649 0.52 +0.9
675,525 - SO0649 0.55 -0.5
675,537 + SO0649 0.60 +1.1
675,547 + SO0649 0.63 +1.7
675,658 - +0.9
675,683 + +0.1
675,691 - +0.4
675,701 + -0.3
675,739 - -0.2
675,739 - +1.1
675,818 + SO0650 0.30 +0.1
675,818 + SO0650 0.30 +1.1
675,818 + SO0650 0.30 +0.9
675,818 + SO0650 0.30 +1.9
675,826 - SO0650 0.33 +0.5
675,826 - SO0650 0.33 -0.8
675,905 + SO0650 0.68 +1.1
675,916 + SO0650 0.72 +0.9
675,916 + SO0650 0.72 +1.8
675,916 + SO0650 0.72 +1.5
675,924 - SO0650 0.76 -0.2
676,016 + -1.2
676,023 - +0.1
676,024 - -0.4
676,087 - SO0651 0.18 +1.9
676,276 + SO0651 0.49 -0.0
676,276 + SO0651 0.49 +0.1
676,284 - SO0651 0.50 +0.4
676,284 - SO0651 0.50 +0.8
676,291 + SO0651 0.51 +0.1
676,298 + SO0651 0.53 -0.3
676,311 + SO0651 0.55 +0.7
676,319 - SO0651 0.56 -0.9
676,334 + SO0651 0.59 +0.6
676,354 + SO0651 0.62 -0.1
676,368 + SO0651 0.64 +0.0
676,419 + SO0651 0.73 +0.8
676,443 - SO0651 0.77 +0.3
676,550 + -1.1
676,550 + +0.2
676,558 - -0.3
676,558 - -0.1
676,560 + +1.1
676,560 + +0.1
676,568 - +0.6
676,568 - +0.3
676,568 - +0.1
676,568 - -0.6
676,641 - SO0652 0.14 -0.1
676,671 - SO0652 0.21 -0.3
676,694 - SO0652 0.26 +1.1
676,745 + SO0652 0.37 +0.4
676,761 + SO0652 0.40 -0.2
676,761 + SO0652 0.40 +0.6
676,769 - SO0652 0.42 -0.1
676,795 + SO0652 0.48 +0.2
676,800 + SO0652 0.49 +0.1
676,830 + SO0652 0.55 +2.4
676,832 - SO0652 0.56 -1.9
676,849 + SO0652 0.60 +0.3
676,855 + SO0652 0.61 -0.2
676,862 + SO0652 0.62 -1.3
676,862 + SO0652 0.62 +0.4
676,870 + SO0652 0.64 +0.1
676,870 + SO0652 0.64 +0.4
676,870 + SO0652 0.64 +1.4
676,875 + SO0652 0.65 -0.2
676,878 - SO0652 0.66 +0.7
676,909 + SO0652 0.73 +0.1
676,916 - SO0652 0.74 -0.1
676,918 + SO0652 0.75 +1.0
676,931 - SO0652 0.78 +0.1
676,944 + SO0652 0.80 +0.4
676,944 + SO0652 0.80 -1.1
676,950 + SO0652 0.82 +2.0
676,950 + SO0652 0.82 -2.5
676,950 + SO0652 0.82 -0.1
676,950 + SO0652 0.82 +0.3
676,950 + SO0652 0.82 +0.6
676,950 + SO0652 0.82 +0.8
676,952 - SO0652 0.82 +0.1
676,952 - SO0652 0.82 -0.7
676,952 - SO0652 0.82 +0.6
676,952 - SO0652 0.82 +0.1
676,958 - SO0652 0.84 +0.6
676,958 - SO0652 0.84 -0.2
676,975 + SO0652 0.87 +0.5
676,979 - SO0652 0.88 -0.7

Or see this region's nucleotide sequence