Strain Fitness in Shewanella oneidensis MR-1 around SO_3875

Experiment: 20 mM D,L-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	20 mM D,L-Lactate
4,021,963	+		SO3874	0.77	-1.6
4,021,963	+		SO3874	0.77	+0.0
4,021,970	-		SO3874	0.77	-0.2
4,021,978	-		SO3874	0.78	-0.7
4,021,980	+		SO3874	0.78	+1.0
4,021,980	+		SO3874	0.78	+1.0
4,021,981	+		SO3874	0.78	+0.6
4,021,988	-		SO3874	0.79	-1.1
4,021,988	-		SO3874	0.79	+1.4
4,021,989	-		SO3874	0.79	+1.1
4,021,989	-		SO3874	0.79	+0.8
4,021,991	+		SO3874	0.79	-1.6
4,021,995	-		SO3874	0.80	-0.2
4,022,010	-		SO3874	0.81	+0.0
4,022,010	-		SO3874	0.81	+0.2
4,022,010	-		SO3874	0.81	-0.1
4,022,010	-		SO3874	0.81	+1.3
4,022,011	-		SO3874	0.81	+0.6
4,022,011	-		SO3874	0.81	-0.8
4,022,013	+		SO3874	0.82	+2.0
4,022,016	-		SO3874	0.82	-0.7
4,022,021	+		SO3874	0.83	-0.4
4,022,021	+		SO3874	0.83	-1.0
4,022,021	+		SO3874	0.83	-0.2
4,022,021	+		SO3874	0.83	+1.4
4,022,021	+		SO3874	0.83	+0.0
4,022,021	+		SO3874	0.83	-0.3
4,022,021	+		SO3874	0.83	+0.0
4,022,021	+		SO3874	0.83	+2.0
4,022,021	-		SO3874	0.83	+0.4
4,022,021	-		SO3874	0.83	+1.3
4,022,021	-		SO3874	0.83	-1.6
4,022,029	-		SO3874	0.83	+0.9
4,022,029	-		SO3874	0.83	+1.0
4,022,029	-		SO3874	0.83	-0.2
4,022,029	-		SO3874	0.83	-1.1
4,022,029	-		SO3874	0.83	-0.6
4,022,029	-		SO3874	0.83	+0.2
4,022,029	-		SO3874	0.83	+0.4
4,022,029	-		SO3874	0.83	-0.4
4,022,031	+		SO3874	0.84	+0.2
4,022,031	+		SO3874	0.84	+0.4
4,022,048	+		SO3874	0.85	+0.3
4,022,048	+		SO3874	0.85	+0.5
4,022,051	+		SO3874	0.86	+0.6
4,022,058	+		SO3874	0.86	-0.1
4,022,058	+		SO3874	0.86	+0.3
4,022,058	+		SO3874	0.86	-0.2
4,022,065	-		SO3874	0.87	+1.0
4,022,065	-		SO3874	0.87	+0.8
4,022,066	-		SO3874	0.87	-2.3
4,022,066	-		SO3874	0.87	-0.7
4,022,076	+		SO3874	0.88	+0.0
4,022,077	-		SO3874	0.88	+0.7
4,022,134	-				+1.0
4,022,136	+				+0.3
4,022,136	+				+0.0
4,022,136	+				+1.0
4,022,138	+				+0.4
4,022,144	-				+0.0
4,022,204	-				-0.4
4,022,234	-				+0.0
4,022,254	-				+0.5
4,022,279	-				-0.4
4,022,290	-				-0.7
4,022,295	+				+0.4
4,022,295	+				+0.0
4,022,302	+				+0.2
4,022,334	-				-0.6
4,022,337	-				+0.0
4,022,339	+				+0.1
4,022,347	-				-1.0
4,022,347	-				+0.8
4,022,364	+				+0.6
4,022,364	+				-0.8
4,022,372	-				+0.8
4,022,372	-				+0.0
4,022,372	-				+0.3
4,022,409	-				+0.0
4,022,411	+				-0.6
4,022,427	+				+0.4
4,022,446	-				+1.0
4,022,446	-				-0.8
4,022,455	+				+1.5
4,022,455	+				+0.6
4,022,460	+				+1.0
4,022,460	+				+0.9
4,022,460	+				+0.9
4,022,460	+				+2.2
4,022,460	+				+0.4
4,022,463	-				+1.0
4,022,468	-				+0.1
4,022,468	-				-1.6
4,022,468	-				-1.2
4,022,468	-				+0.6
4,022,468	-				+0.4
4,022,477	-				+1.4
4,022,477	-				-0.4
4,022,482	-				+0.2
4,022,483	-				+0.1
4,022,484	-				+0.6
4,022,486	+				+0.6
4,022,486	+				-0.9
4,022,486	+				+1.0
4,022,486	+				+0.4
4,022,486	+				-0.2
4,022,486	+				-0.1
4,022,486	+				-0.4
4,022,486	+				+0.0
4,022,486	+				-0.6
4,022,486	+				+0.8
4,022,486	+				+0.6
4,022,486	+				+1.4
4,022,486	+				+1.0
4,022,486	+				-0.8
4,022,486	+				+0.5
4,022,486	+				+0.3
4,022,486	+				+0.7
4,022,486	+				-0.2
4,022,494	-				+1.3
4,022,494	-				+0.2
4,022,494	-				+0.9
4,022,494	-				+1.1
4,022,494	-				-0.9
4,022,494	-				-0.0
4,022,494	-				+1.2
4,022,494	-				-0.6
4,022,494	-				+0.2
4,022,494	-				+0.4
4,022,494	-				+0.8
4,022,494	-				+0.2
4,022,494	-				-3.1
4,022,494	-				+0.4
4,022,494	-				+0.9
4,022,494	-				+0.5
4,022,494	-				+0.0
4,022,507	+				+0.4
4,022,507	+				-0.7
4,022,511	+				+0.4
4,022,511	+				+0.5
4,022,511	+				+0.8
4,022,511	+				-0.7
4,022,511	+				+1.2
4,022,511	+				-0.1
4,022,511	+				+0.4
4,022,513	+				+0.9
4,022,516	-				+1.1
4,022,519	-				+0.6
4,022,519	-				+0.6
4,022,519	-				+0.8
4,022,519	-				+1.4
4,022,519	-				+0.0
4,022,519	-				+1.2
4,022,519	-				+0.3
4,022,521	-				-0.0
4,022,521	-				-0.6
4,022,534	+				-0.0
4,022,552	-				-0.1
4,022,612	+				+0.2
4,022,612	+				+0.6
4,022,620	-				-1.0
4,022,620	-				-0.8
4,022,620	-				+0.3
4,022,625	-				-0.5
4,022,627	+				+0.3
4,022,627	+				+0.5
4,022,630	-				+0.3
4,022,652	+				+0.1
4,022,667	-				+1.4
4,022,678	-				+0.4
4,022,700	-				+1.3
4,022,709	+				+1.1
4,022,709	-				-0.2
4,022,712	-				+0.6
4,022,714	+				-0.1
4,022,714	+				-0.5
4,022,717	-				+1.0
4,022,720	+				-1.2
4,022,722	-				+1.2
4,022,722	-				+0.5
4,022,722	-				+0.7
4,022,726	-				-0.1
4,022,736	-				+0.4
4,022,737	+				-0.6
4,022,742	+				+0.5
4,022,742	+				+0.0
4,022,742	+				+0.1
4,022,742	+				+0.3
4,022,745	-				-0.1
4,022,745	-				-0.6
4,022,750	-				+0.2
4,022,750	-				+0.0
4,022,757	+				-0.1
4,022,757	-				+0.8
4,022,757	-				+1.0
4,022,757	-				+0.1
4,022,759	+				-0.8
4,022,759	+				+1.1
4,022,759	+				+1.0
4,022,759	+				+0.0
4,022,759	+				+0.4
4,022,759	+				+0.0
4,022,759	+				+0.5
4,022,759	+				+1.1
4,022,759	+				+0.4
4,022,759	+				+0.9
4,022,759	+				+2.0
4,022,759	+				-0.7
4,022,759	+				+0.7
4,022,759	+				+0.2
4,022,759	+				+0.0
4,022,765	-				+0.0
4,022,766	+				-0.7
4,022,766	+				+1.6
4,022,767	-				+0.0
4,022,767	-				+0.7
4,022,767	-				+0.0
4,022,767	-				+0.0
4,022,767	-				+0.9
4,022,767	-				-0.5
4,022,767	-				+0.0
4,022,767	-				-1.1
4,022,767	-				+0.7
4,022,767	-				+0.3
4,022,767	-				+1.0
4,022,767	-				+0.5
4,022,767	-				-0.2
4,022,767	-				+0.1
4,022,767	-				+0.6
4,022,767	-				+0.0
4,022,767	-				-0.3
4,022,767	-				+1.6
4,022,767	-				-0.3
4,022,767	-				+0.2
4,022,767	-				-0.7
4,022,767	-				-0.8
4,022,767	-				-0.4
4,022,777	-				+0.2
4,022,797	+				+0.1
4,022,797	+				-1.0
4,022,797	+				-0.2
4,022,805	-				+0.7
4,022,945	+				-0.8
4,022,955	+				+0.9
4,022,955	+				+0.3
4,022,955	+				-0.8
4,022,955	+				-0.6
4,022,992	+				+1.0
4,023,020	-		SO_3875	0.11	+1.4
4,023,068	-		SO_3875	0.19	-0.7
4,023,068	-		SO_3875	0.19	-0.3
4,023,101	-		SO_3875	0.26	+0.8
4,023,101	-		SO_3875	0.26	+0.6
4,023,101	-		SO_3875	0.26	+1.2
4,023,101	-		SO_3875	0.26	+0.2
4,023,101	-		SO_3875	0.26	-0.2
4,023,101	-		SO_3875	0.26	+0.1