Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1191 and SMa1192 are separated by 78 nucleotides SMa1192 and SMa1194 are separated by 48 nucleotides SMa1194 and SMa1195 are separated by 15 nucleotides SMa1195 and SMa1197 are separated by 175 nucleotides
SMa1191: SMa1191 - nitric oxide dioxygenase, at 654,733 to 655,944
SMa1191
SMa1192: SMa1192 - hypothetical protein, at 656,023 to 656,316
SMa1192
SMa1194: SMa1194 - NnrS dehydrogenase, at 656,365 to 657,546
SMa1194
SMa1195: SMa1195 - hypothetical protein, at 657,562 to 658,236
SMa1195
SMa1197: SMa1197 - hypothetical protein, at 658,412 to 658,774
SMa1197
Position (kb) 656
657
658 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 655.387 kb on + strand, within SMa1191 at 655.499 kb on - strand, within SMa1191 at 655.510 kb on + strand, within SMa1191 at 655.511 kb on - strand, within SMa1191 at 655.511 kb on - strand, within SMa1191 at 655.520 kb on + strand, within SMa1191 at 655.521 kb on - strand, within SMa1191 at 655.629 kb on - strand, within SMa1191 at 655.629 kb on - strand, within SMa1191 at 655.652 kb on + strand, within SMa1191 at 655.689 kb on + strand, within SMa1191 at 655.690 kb on - strand, within SMa1191 at 655.720 kb on + strand, within SMa1191 at 655.721 kb on - strand, within SMa1191 at 655.759 kb on + strand, within SMa1191 at 655.828 kb on + strand at 655.828 kb on + strand at 655.829 kb on - strand at 655.829 kb on - strand at 655.910 kb on - strand at 656.073 kb on - strand, within SMa1192 at 656.334 kb on + strand at 656.335 kb on - strand at 656.335 kb on - strand at 656.341 kb on - strand at 656.367 kb on - strand at 656.367 kb on - strand at 656.480 kb on + strand at 656.480 kb on + strand at 656.480 kb on + strand at 656.480 kb on + strand at 656.481 kb on - strand at 656.481 kb on - strand at 656.481 kb on - strand at 656.481 kb on - strand at 656.481 kb on - strand at 656.485 kb on + strand, within SMa1194 at 656.485 kb on + strand, within SMa1194 at 656.486 kb on - strand, within SMa1194 at 656.691 kb on + strand, within SMa1194 at 656.691 kb on + strand, within SMa1194 at 656.692 kb on - strand, within SMa1194 at 656.750 kb on - strand, within SMa1194 at 656.751 kb on + strand, within SMa1194 at 656.751 kb on + strand, within SMa1194 at 656.752 kb on - strand, within SMa1194 at 656.752 kb on - strand, within SMa1194 at 656.752 kb on - strand, within SMa1194 at 656.752 kb on - strand, within SMa1194 at 656.752 kb on - strand, within SMa1194 at 656.754 kb on + strand, within SMa1194 at 656.754 kb on + strand, within SMa1194 at 656.878 kb on - strand, within SMa1194 at 657.019 kb on + strand, within SMa1194 at 657.058 kb on + strand, within SMa1194 at 657.118 kb on - strand, within SMa1194 at 657.118 kb on - strand, within SMa1194 at 657.120 kb on - strand, within SMa1194 at 657.256 kb on - strand, within SMa1194 at 657.312 kb on + strand, within SMa1194 at 657.313 kb on - strand, within SMa1194 at 657.474 kb on + strand at 657.475 kb on - strand at 657.483 kb on + strand at 657.494 kb on - strand at 657.552 kb on - strand at 657.552 kb on - strand at 657.663 kb on + strand at 657.663 kb on + strand, within SMa1195 at 657.666 kb on - strand, within SMa1195 at 657.666 kb on - strand, within SMa1195 at 657.883 kb on + strand, within SMa1195 at 657.883 kb on + strand, within SMa1195 at 657.989 kb on + strand, within SMa1195 at 657.989 kb on + strand, within SMa1195 at 657.990 kb on - strand, within SMa1195 at 658.054 kb on + strand, within SMa1195 at 658.055 kb on - strand, within SMa1195 at 658.225 kb on + strand at 658.282 kb on + strand at 658.330 kb on + strand at 658.330 kb on + strand at 658.330 kb on + strand at 658.331 kb on - strand at 658.535 kb on + strand, within SMa1197 at 658.540 kb on + strand, within SMa1197 at 658.540 kb on + strand, within SMa1197 at 658.540 kb on + strand, within SMa1197 at 658.541 kb on - strand, within SMa1197
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 655,387 + SMa1191 0.54 -0.5 655,499 - SMa1191 0.63 -0.5 655,510 + SMa1191 0.64 +0.6 655,511 - SMa1191 0.64 +0.2 655,511 - SMa1191 0.64 +0.7 655,520 + SMa1191 0.65 +0.1 655,521 - SMa1191 0.65 +0.7 655,629 - SMa1191 0.74 +0.8 655,629 - SMa1191 0.74 +0.7 655,652 + SMa1191 0.76 +1.5 655,689 + SMa1191 0.79 +0.8 655,690 - SMa1191 0.79 -0.4 655,720 + SMa1191 0.81 +0.2 655,721 - SMa1191 0.82 -0.2 655,759 + SMa1191 0.85 +1.3 655,828 + +0.0 655,828 + +0.2 655,829 - +0.0 655,829 - +0.6 655,910 - +0.4 656,073 - SMa1192 0.17 +1.0 656,334 + +0.3 656,335 - -0.2 656,335 - +0.3 656,341 - +1.5 656,367 - +1.7 656,367 - +0.7 656,480 + +0.5 656,480 + +0.0 656,480 + +0.5 656,480 + +0.4 656,481 - +1.0 656,481 - +1.3 656,481 - -0.2 656,481 - -2.6 656,481 - +0.1 656,485 + SMa1194 0.10 +0.0 656,485 + SMa1194 0.10 +0.9 656,486 - SMa1194 0.10 +0.2 656,691 + SMa1194 0.28 +0.3 656,691 + SMa1194 0.28 +0.9 656,692 - SMa1194 0.28 -0.0 656,750 - SMa1194 0.33 +0.5 656,751 + SMa1194 0.33 +0.5 656,751 + SMa1194 0.33 -1.1 656,752 - SMa1194 0.33 +0.2 656,752 - SMa1194 0.33 +0.8 656,752 - SMa1194 0.33 +0.3 656,752 - SMa1194 0.33 +0.1 656,752 - SMa1194 0.33 -0.1 656,754 + SMa1194 0.33 +0.1 656,754 + SMa1194 0.33 -0.2 656,878 - SMa1194 0.43 +1.4 657,019 + SMa1194 0.55 -0.1 657,058 + SMa1194 0.59 -0.1 657,118 - SMa1194 0.64 +0.4 657,118 - SMa1194 0.64 +0.2 657,120 - SMa1194 0.64 -0.2 657,256 - SMa1194 0.75 +0.8 657,312 + SMa1194 0.80 +0.4 657,313 - SMa1194 0.80 +0.3 657,474 + -0.3 657,475 - -0.1 657,483 + +0.2 657,494 - +0.3 657,552 - +0.3 657,552 - +0.4 657,663 + -0.9 657,663 + SMa1195 0.15 +0.2 657,666 - SMa1195 0.15 +0.4 657,666 - SMa1195 0.15 +0.2 657,883 + SMa1195 0.48 +1.3 657,883 + SMa1195 0.48 -0.8 657,989 + SMa1195 0.63 +1.1 657,989 + SMa1195 0.63 -4.2 657,990 - SMa1195 0.63 -2.7 658,054 + SMa1195 0.73 +0.2 658,055 - SMa1195 0.73 +0.1 658,225 + -0.1 658,282 + +0.0 658,330 + +0.1 658,330 + -0.9 658,330 + -2.0 658,331 - -0.1 658,535 + SMa1197 0.34 -0.2 658,540 + SMa1197 0.35 +0.1 658,540 + SMa1197 0.35 +0.5 658,540 + SMa1197 0.35 +0.3 658,541 - SMa1197 0.36 -0.2
Or see this region's nucleotide sequence