Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20976

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20975 and SM_b20976 are separated by 73 nucleotidesSM_b20976 and SM_b20977 are separated by 30 nucleotides SM_b20975: SM_b20975 - amino acid uptake ABC transporter permease, at 1,207,152 to 1,208,801 _b20975 SM_b20976: SM_b20976 - amino acid uptake ABC transporter substrate-binding protein precursor, at 1,208,875 to 1,209,621 _b20976 SM_b20977: SM_b20977 - LacI family transcriptional regulator, at 1,209,652 to 1,210,719 _b20977 Position (kb) 1208 1209 1210Strain fitness (log2 ratio) -1 0 1at 1207.957 kb on - strand, within SM_b20975at 1207.957 kb on - strand, within SM_b20975at 1207.957 kb on - strand, within SM_b20975at 1208.020 kb on + strand, within SM_b20975at 1208.021 kb on - strand, within SM_b20975at 1208.021 kb on - strand, within SM_b20975at 1208.111 kb on - strand, within SM_b20975at 1208.111 kb on - strand, within SM_b20975at 1208.164 kb on + strand, within SM_b20975at 1208.432 kb on + strand, within SM_b20975at 1208.433 kb on - strand, within SM_b20975at 1208.498 kb on - strand, within SM_b20975at 1208.498 kb on - strand, within SM_b20975at 1208.734 kb on + strandat 1208.735 kb on - strandat 1208.735 kb on - strandat 1208.735 kb on - strandat 1208.876 kb on + strandat 1208.876 kb on + strandat 1208.877 kb on - strandat 1209.137 kb on + strand, within SM_b20976at 1209.271 kb on + strand, within SM_b20976at 1209.271 kb on + strand, within SM_b20976at 1209.293 kb on + strand, within SM_b20976at 1209.294 kb on - strand, within SM_b20976at 1209.294 kb on - strand, within SM_b20976at 1209.294 kb on - strand, within SM_b20976at 1209.461 kb on - strand, within SM_b20976at 1209.538 kb on - strand, within SM_b20976at 1209.667 kb on + strandat 1209.806 kb on + strand, within SM_b20977at 1209.806 kb on + strand, within SM_b20977at 1209.807 kb on - strand, within SM_b20977at 1209.833 kb on + strand, within SM_b20977at 1209.834 kb on - strand, within SM_b20977at 1209.834 kb on - strand, within SM_b20977at 1210.011 kb on + strand, within SM_b20977at 1210.313 kb on - strand, within SM_b20977at 1210.403 kb on + strand, within SM_b20977at 1210.450 kb on - strand, within SM_b20977at 1210.450 kb on - strand, within SM_b20977at 1210.450 kb on - strand, within SM_b20977at 1210.451 kb on + strand, within SM_b20977at 1210.452 kb on - strand, within SM_b20977at 1210.452 kb on - strand, within SM_b20977at 1210.472 kb on + strand, within SM_b20977at 1210.472 kb on + strand, within SM_b20977at 1210.472 kb on + strand, within SM_b20977at 1210.472 kb on + strand, within SM_b20977at 1210.472 kb on + strand, within SM_b20977at 1210.472 kb on + strand, within SM_b20977at 1210.473 kb on - strand, within SM_b20977

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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1,207,957 - SM_b20975 0.49 +0.9
1,207,957 - SM_b20975 0.49 -0.7
1,207,957 - SM_b20975 0.49 +0.3
1,208,020 + SM_b20975 0.53 -0.1
1,208,021 - SM_b20975 0.53 +0.4
1,208,021 - SM_b20975 0.53 -0.6
1,208,111 - SM_b20975 0.58 -0.3
1,208,111 - SM_b20975 0.58 +0.4
1,208,164 + SM_b20975 0.61 -0.1
1,208,432 + SM_b20975 0.78 -0.5
1,208,433 - SM_b20975 0.78 +0.1
1,208,498 - SM_b20975 0.82 -0.0
1,208,498 - SM_b20975 0.82 -0.7
1,208,734 + +0.8
1,208,735 - +0.5
1,208,735 - +1.3
1,208,735 - -0.3
1,208,876 + -0.1
1,208,876 + +0.4
1,208,877 - +1.1
1,209,137 + SM_b20976 0.35 +0.4
1,209,271 + SM_b20976 0.53 +0.7
1,209,271 + SM_b20976 0.53 -0.2
1,209,293 + SM_b20976 0.56 -0.6
1,209,294 - SM_b20976 0.56 -1.2
1,209,294 - SM_b20976 0.56 -1.3
1,209,294 - SM_b20976 0.56 -0.3
1,209,461 - SM_b20976 0.78 -0.8
1,209,538 - SM_b20976 0.89 -0.2
1,209,667 + -0.4
1,209,806 + SM_b20977 0.14 -0.5
1,209,806 + SM_b20977 0.14 +0.1
1,209,807 - SM_b20977 0.15 +0.3
1,209,833 + SM_b20977 0.17 +0.5
1,209,834 - SM_b20977 0.17 -0.1
1,209,834 - SM_b20977 0.17 +1.7
1,210,011 + SM_b20977 0.34 +0.1
1,210,313 - SM_b20977 0.62 -0.1
1,210,403 + SM_b20977 0.70 +0.1
1,210,450 - SM_b20977 0.75 +0.2
1,210,450 - SM_b20977 0.75 -0.4
1,210,450 - SM_b20977 0.75 -0.7
1,210,451 + SM_b20977 0.75 -0.2
1,210,452 - SM_b20977 0.75 +0.3
1,210,452 - SM_b20977 0.75 +0.7
1,210,472 + SM_b20977 0.77 -0.6
1,210,472 + SM_b20977 0.77 -0.1
1,210,472 + SM_b20977 0.77 +0.6
1,210,472 + SM_b20977 0.77 +0.9
1,210,472 + SM_b20977 0.77 +0.1
1,210,472 + SM_b20977 0.77 +0.3
1,210,473 - SM_b20977 0.77 +0.2

Or see this region's nucleotide sequence