Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20490

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20489 and SM_b20490 overlap by 8 nucleotidesSM_b20490 and SM_b22020 are separated by 107 nucleotides SM_b20489: SM_b20489 - carbohydrate kinase, at 505,347 to 506,819 _b20489 SM_b20490: SM_b20490 - L-fuculose phosphate aldolase, at 506,812 to 507,510 _b20490 SM_b22020: SM_b22020 - hypothetical protein, at 507,618 to 508,478 _b22020 Position (kb) 506 507 508Strain fitness (log2 ratio) -2 -1 0 1at 505.822 kb on - strand, within SM_b20489at 505.822 kb on - strand, within SM_b20489at 505.840 kb on - strand, within SM_b20489at 506.084 kb on - strand, within SM_b20489at 506.245 kb on + strand, within SM_b20489at 506.467 kb on - strand, within SM_b20489at 506.467 kb on - strand, within SM_b20489at 506.467 kb on - strand, within SM_b20489at 506.616 kb on + strand, within SM_b20489at 506.617 kb on - strand, within SM_b20489at 506.965 kb on + strand, within SM_b20490at 506.966 kb on - strand, within SM_b20490at 507.016 kb on + strand, within SM_b20490at 507.016 kb on + strand, within SM_b20490at 507.016 kb on + strand, within SM_b20490at 507.016 kb on + strand, within SM_b20490at 507.016 kb on + strand, within SM_b20490at 507.017 kb on - strand, within SM_b20490at 507.017 kb on - strand, within SM_b20490at 507.017 kb on - strand, within SM_b20490at 507.017 kb on - strand, within SM_b20490at 507.017 kb on - strand, within SM_b20490at 507.112 kb on + strand, within SM_b20490at 507.113 kb on - strand, within SM_b20490at 507.160 kb on + strand, within SM_b20490at 507.160 kb on + strand, within SM_b20490at 507.205 kb on + strand, within SM_b20490at 507.296 kb on + strand, within SM_b20490at 507.364 kb on + strand, within SM_b20490at 507.364 kb on + strand, within SM_b20490at 507.365 kb on - strand, within SM_b20490at 507.365 kb on - strand, within SM_b20490at 507.365 kb on - strand, within SM_b20490at 507.365 kb on - strand, within SM_b20490at 507.619 kb on + strandat 507.620 kb on - strandat 507.620 kb on - strandat 507.628 kb on + strandat 507.771 kb on - strand, within SM_b22020at 507.775 kb on - strand, within SM_b22020at 507.775 kb on - strand, within SM_b22020at 507.844 kb on + strand, within SM_b22020at 507.844 kb on + strand, within SM_b22020at 507.845 kb on - strand, within SM_b22020at 507.845 kb on - strand, within SM_b22020at 507.860 kb on + strand, within SM_b22020at 507.861 kb on - strand, within SM_b22020at 507.861 kb on - strand, within SM_b22020at 507.861 kb on - strand, within SM_b22020at 507.976 kb on - strand, within SM_b22020at 507.976 kb on - strand, within SM_b22020at 508.016 kb on + strand, within SM_b22020at 508.017 kb on - strand, within SM_b22020at 508.017 kb on - strand, within SM_b22020at 508.109 kb on + strand, within SM_b22020at 508.109 kb on + strand, within SM_b22020at 508.109 kb on + strand, within SM_b22020at 508.109 kb on + strand, within SM_b22020at 508.109 kb on + strand, within SM_b22020at 508.110 kb on - strand, within SM_b22020at 508.110 kb on - strand, within SM_b22020at 508.110 kb on - strand, within SM_b22020at 508.110 kb on - strand, within SM_b22020at 508.111 kb on + strand, within SM_b22020at 508.111 kb on + strand, within SM_b22020at 508.111 kb on + strand, within SM_b22020at 508.111 kb on + strand, within SM_b22020at 508.112 kb on - strand, within SM_b22020at 508.112 kb on - strand, within SM_b22020at 508.112 kb on - strand, within SM_b22020at 508.112 kb on - strand, within SM_b22020at 508.117 kb on + strand, within SM_b22020at 508.118 kb on - strand, within SM_b22020at 508.207 kb on + strand, within SM_b22020at 508.322 kb on - strand, within SM_b22020at 508.322 kb on - strand, within SM_b22020at 508.348 kb on - strand, within SM_b22020at 508.389 kb on + strand, within SM_b22020

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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505,822 - SM_b20489 0.32 +0.7
505,822 - SM_b20489 0.32 +0.2
505,840 - SM_b20489 0.33 +0.7
506,084 - SM_b20489 0.50 +0.3
506,245 + SM_b20489 0.61 -0.6
506,467 - SM_b20489 0.76 +1.2
506,467 - SM_b20489 0.76 -0.5
506,467 - SM_b20489 0.76 -0.3
506,616 + SM_b20489 0.86 -0.9
506,617 - SM_b20489 0.86 +0.4
506,965 + SM_b20490 0.22 -0.6
506,966 - SM_b20490 0.22 -0.4
507,016 + SM_b20490 0.29 -0.9
507,016 + SM_b20490 0.29 -0.3
507,016 + SM_b20490 0.29 -0.1
507,016 + SM_b20490 0.29 -0.4
507,016 + SM_b20490 0.29 -1.1
507,017 - SM_b20490 0.29 +0.9
507,017 - SM_b20490 0.29 -0.3
507,017 - SM_b20490 0.29 -0.4
507,017 - SM_b20490 0.29 -0.2
507,017 - SM_b20490 0.29 -0.0
507,112 + SM_b20490 0.43 -0.2
507,113 - SM_b20490 0.43 -1.3
507,160 + SM_b20490 0.50 -0.4
507,160 + SM_b20490 0.50 -0.1
507,205 + SM_b20490 0.56 +0.7
507,296 + SM_b20490 0.69 -2.4
507,364 + SM_b20490 0.79 -0.3
507,364 + SM_b20490 0.79 +0.0
507,365 - SM_b20490 0.79 -0.3
507,365 - SM_b20490 0.79 -0.6
507,365 - SM_b20490 0.79 -0.4
507,365 - SM_b20490 0.79 -0.1
507,619 + -1.2
507,620 - -0.5
507,620 - -0.5
507,628 + -1.4
507,771 - SM_b22020 0.18 -0.4
507,775 - SM_b22020 0.18 +1.5
507,775 - SM_b22020 0.18 +0.1
507,844 + SM_b22020 0.26 -0.4
507,844 + SM_b22020 0.26 -0.1
507,845 - SM_b22020 0.26 -0.5
507,845 - SM_b22020 0.26 +0.1
507,860 + SM_b22020 0.28 -1.0
507,861 - SM_b22020 0.28 -0.0
507,861 - SM_b22020 0.28 +0.3
507,861 - SM_b22020 0.28 -0.2
507,976 - SM_b22020 0.42 +1.4
507,976 - SM_b22020 0.42 -0.0
508,016 + SM_b22020 0.46 -0.4
508,017 - SM_b22020 0.46 -0.2
508,017 - SM_b22020 0.46 -1.1
508,109 + SM_b22020 0.57 -1.0
508,109 + SM_b22020 0.57 -0.3
508,109 + SM_b22020 0.57 +1.3
508,109 + SM_b22020 0.57 -1.6
508,109 + SM_b22020 0.57 -0.2
508,110 - SM_b22020 0.57 +0.2
508,110 - SM_b22020 0.57 -0.4
508,110 - SM_b22020 0.57 +0.5
508,110 - SM_b22020 0.57 -1.0
508,111 + SM_b22020 0.57 +0.5
508,111 + SM_b22020 0.57 +0.3
508,111 + SM_b22020 0.57 -1.0
508,111 + SM_b22020 0.57 +0.8
508,112 - SM_b22020 0.57 -0.1
508,112 - SM_b22020 0.57 -0.4
508,112 - SM_b22020 0.57 -0.2
508,112 - SM_b22020 0.57 +0.1
508,117 + SM_b22020 0.58 -0.1
508,118 - SM_b22020 0.58 +0.8
508,207 + SM_b22020 0.68 -0.0
508,322 - SM_b22020 0.82 -1.3
508,322 - SM_b22020 0.82 +0.6
508,348 - SM_b22020 0.85 -0.6
508,389 + SM_b22020 0.90 -0.5

Or see this region's nucleotide sequence