Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20422 and SM_b20423 are separated by 5 nucleotides SM_b20423 and SM_b20424 are separated by 119 nucleotides
SM_b20422: SM_b20422 - oxidoreductase, at 436,049 to 437,128
_b20422
SM_b20423: SM_b20423 - hypothetical protein, at 437,134 to 438,510
_b20423
SM_b20424: SM_b20424 - succinate-semialdehyde dehydrogenase, at 438,630 to 440,126
_b20424
Position (kb) 437
438
439 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 436.171 kb on + strand, within SM_b20422 at 436.172 kb on - strand, within SM_b20422 at 436.174 kb on - strand, within SM_b20422 at 436.242 kb on + strand, within SM_b20422 at 436.242 kb on + strand, within SM_b20422 at 436.242 kb on + strand, within SM_b20422 at 436.243 kb on - strand, within SM_b20422 at 436.299 kb on + strand, within SM_b20422 at 436.299 kb on + strand, within SM_b20422 at 436.619 kb on - strand, within SM_b20422 at 436.624 kb on - strand, within SM_b20422 at 436.624 kb on - strand, within SM_b20422 at 436.703 kb on - strand, within SM_b20422 at 436.705 kb on - strand, within SM_b20422 at 436.741 kb on - strand, within SM_b20422 at 436.776 kb on + strand, within SM_b20422 at 436.846 kb on + strand, within SM_b20422 at 436.972 kb on + strand, within SM_b20422 at 436.973 kb on - strand, within SM_b20422 at 437.037 kb on - strand at 437.050 kb on - strand at 437.050 kb on - strand at 437.147 kb on - strand at 437.628 kb on - strand, within SM_b20423 at 437.678 kb on + strand, within SM_b20423 at 437.748 kb on + strand, within SM_b20423 at 437.753 kb on + strand, within SM_b20423 at 437.753 kb on + strand, within SM_b20423 at 437.754 kb on - strand, within SM_b20423 at 437.754 kb on - strand, within SM_b20423 at 437.786 kb on + strand, within SM_b20423 at 437.900 kb on + strand, within SM_b20423 at 437.901 kb on - strand, within SM_b20423 at 437.948 kb on + strand, within SM_b20423 at 437.948 kb on + strand, within SM_b20423 at 437.949 kb on - strand, within SM_b20423 at 437.952 kb on - strand, within SM_b20423 at 438.053 kb on + strand, within SM_b20423 at 438.111 kb on - strand, within SM_b20423 at 438.111 kb on - strand, within SM_b20423 at 438.111 kb on - strand, within SM_b20423 at 438.113 kb on + strand, within SM_b20423 at 438.168 kb on - strand, within SM_b20423 at 438.248 kb on + strand, within SM_b20423 at 438.248 kb on + strand, within SM_b20423 at 438.257 kb on + strand, within SM_b20423 at 438.258 kb on - strand, within SM_b20423 at 438.260 kb on + strand, within SM_b20423 at 438.261 kb on - strand, within SM_b20423 at 438.315 kb on - strand, within SM_b20423 at 438.372 kb on + strand, within SM_b20423 at 438.383 kb on + strand at 438.383 kb on + strand at 438.384 kb on - strand at 438.565 kb on - strand at 438.652 kb on - strand at 438.656 kb on - strand at 438.851 kb on - strand, within SM_b20424 at 438.877 kb on - strand, within SM_b20424 at 439.199 kb on - strand, within SM_b20424 at 439.199 kb on - strand, within SM_b20424 at 439.259 kb on + strand, within SM_b20424 at 439.260 kb on - strand, within SM_b20424 at 439.260 kb on - strand, within SM_b20424
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 436,171 + SM_b20422 0.11 +0.0 436,172 - SM_b20422 0.11 +0.2 436,174 - SM_b20422 0.12 -0.4 436,242 + SM_b20422 0.18 +3.0 436,242 + SM_b20422 0.18 +0.1 436,242 + SM_b20422 0.18 -0.8 436,243 - SM_b20422 0.18 +1.2 436,299 + SM_b20422 0.23 +0.1 436,299 + SM_b20422 0.23 -0.0 436,619 - SM_b20422 0.53 -0.4 436,624 - SM_b20422 0.53 +2.1 436,624 - SM_b20422 0.53 -0.0 436,703 - SM_b20422 0.61 +0.5 436,705 - SM_b20422 0.61 +1.2 436,741 - SM_b20422 0.64 -0.4 436,776 + SM_b20422 0.67 -0.2 436,846 + SM_b20422 0.74 -0.2 436,972 + SM_b20422 0.85 -0.6 436,973 - SM_b20422 0.86 -0.4 437,037 - -0.3 437,050 - -0.2 437,050 - -0.2 437,147 - -0.5 437,628 - SM_b20423 0.36 -0.7 437,678 + SM_b20423 0.40 -0.0 437,748 + SM_b20423 0.45 +0.0 437,753 + SM_b20423 0.45 -0.6 437,753 + SM_b20423 0.45 -0.5 437,754 - SM_b20423 0.45 +0.0 437,754 - SM_b20423 0.45 +0.1 437,786 + SM_b20423 0.47 -0.3 437,900 + SM_b20423 0.56 -0.1 437,901 - SM_b20423 0.56 -1.8 437,948 + SM_b20423 0.59 -0.4 437,948 + SM_b20423 0.59 -0.3 437,949 - SM_b20423 0.59 +0.2 437,952 - SM_b20423 0.59 -1.1 438,053 + SM_b20423 0.67 -1.1 438,111 - SM_b20423 0.71 -0.4 438,111 - SM_b20423 0.71 -0.6 438,111 - SM_b20423 0.71 +0.3 438,113 + SM_b20423 0.71 -0.0 438,168 - SM_b20423 0.75 +0.1 438,248 + SM_b20423 0.81 +1.2 438,248 + SM_b20423 0.81 -0.1 438,257 + SM_b20423 0.82 -0.4 438,258 - SM_b20423 0.82 +1.4 438,260 + SM_b20423 0.82 -0.3 438,261 - SM_b20423 0.82 +0.7 438,315 - SM_b20423 0.86 +0.4 438,372 + SM_b20423 0.90 -0.6 438,383 + -0.4 438,383 + +1.2 438,384 - +0.1 438,565 - +0.5 438,652 - +0.5 438,656 - -0.6 438,851 - SM_b20424 0.15 -0.4 438,877 - SM_b20424 0.16 -0.6 439,199 - SM_b20424 0.38 -0.1 439,199 - SM_b20424 0.38 -0.8 439,259 + SM_b20424 0.42 +0.5 439,260 - SM_b20424 0.42 -0.1 439,260 - SM_b20424 0.42 -0.4
Or see this region's nucleotide sequence