Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20365 and SM_b20366 are separated by 177 nucleotides SM_b20366 and SM_b20367 are separated by 495 nucleotides
SM_b20365: SM_b20365 - iron ABC transporter substrate-binding protein, at 376,824 to 377,852
_b20365
SM_b20366: SM_b20366 - LacI family transcriptional regulator, at 378,030 to 379,034
_b20366
SM_b20367: SM_b20367 - transcriptional regulator, at 379,530 to 380,222
_b20367
Position (kb) 378
379
380 Strain fitness (log2 ratio) -2
-1
0
1 at 377.039 kb on - strand, within SM_b20365 at 377.275 kb on + strand, within SM_b20365 at 377.329 kb on + strand, within SM_b20365 at 377.330 kb on - strand, within SM_b20365 at 377.449 kb on + strand, within SM_b20365 at 377.473 kb on + strand, within SM_b20365 at 377.554 kb on + strand, within SM_b20365 at 377.554 kb on + strand, within SM_b20365 at 377.659 kb on + strand, within SM_b20365 at 377.659 kb on + strand, within SM_b20365 at 377.955 kb on - strand at 378.104 kb on + strand at 378.155 kb on - strand, within SM_b20366 at 378.236 kb on + strand, within SM_b20366 at 378.236 kb on + strand, within SM_b20366 at 378.262 kb on - strand, within SM_b20366 at 378.699 kb on + strand, within SM_b20366 at 378.888 kb on + strand, within SM_b20366 at 378.889 kb on - strand, within SM_b20366 at 378.889 kb on - strand, within SM_b20366 at 378.889 kb on - strand, within SM_b20366 at 378.920 kb on + strand, within SM_b20366 at 378.925 kb on + strand, within SM_b20366 at 378.926 kb on - strand, within SM_b20366 at 379.033 kb on - strand at 379.036 kb on + strand at 379.036 kb on + strand at 379.036 kb on + strand at 379.037 kb on - strand at 379.086 kb on - strand at 379.112 kb on - strand at 379.112 kb on - strand at 379.115 kb on - strand at 379.115 kb on - strand at 379.193 kb on + strand at 379.193 kb on + strand at 379.194 kb on - strand at 379.403 kb on - strand at 379.411 kb on + strand at 379.411 kb on + strand at 379.412 kb on - strand at 379.443 kb on - strand at 379.532 kb on - strand at 379.532 kb on - strand at 379.627 kb on + strand, within SM_b20367 at 379.732 kb on + strand, within SM_b20367 at 379.859 kb on - strand, within SM_b20367
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 377,039 - SM_b20365 0.21 -0.3 377,275 + SM_b20365 0.44 -1.0 377,329 + SM_b20365 0.49 -0.2 377,330 - SM_b20365 0.49 +0.3 377,449 + SM_b20365 0.61 -1.7 377,473 + SM_b20365 0.63 +0.8 377,554 + SM_b20365 0.71 +0.0 377,554 + SM_b20365 0.71 -0.4 377,659 + SM_b20365 0.81 +0.8 377,659 + SM_b20365 0.81 -0.7 377,955 - -0.5 378,104 + -0.2 378,155 - SM_b20366 0.12 -0.4 378,236 + SM_b20366 0.20 -1.4 378,236 + SM_b20366 0.20 -0.6 378,262 - SM_b20366 0.23 +0.5 378,699 + SM_b20366 0.67 +0.1 378,888 + SM_b20366 0.85 -2.2 378,889 - SM_b20366 0.85 -0.3 378,889 - SM_b20366 0.85 -0.5 378,889 - SM_b20366 0.85 -0.5 378,920 + SM_b20366 0.89 -0.8 378,925 + SM_b20366 0.89 +0.0 378,926 - SM_b20366 0.89 -1.5 379,033 - -0.5 379,036 + +0.5 379,036 + -0.3 379,036 + +0.5 379,037 - +0.9 379,086 - +0.1 379,112 - -0.3 379,112 - +1.4 379,115 - -1.4 379,115 - -0.3 379,193 + -0.1 379,193 + +0.1 379,194 - +0.0 379,403 - -0.6 379,411 + -0.4 379,411 + -0.1 379,412 - -0.5 379,443 - +0.5 379,532 - +1.3 379,532 - +0.3 379,627 + SM_b20367 0.14 -0.5 379,732 + SM_b20367 0.29 +0.1 379,859 - SM_b20367 0.47 -0.6
Or see this region's nucleotide sequence