Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20216 and SM_b20217 are separated by 217 nucleotides SM_b20217 and SM_b20218 are separated by 170 nucleotides
SM_b20216: SM_b20216 - epoxide hydrolase, at 224,114 to 225,160
_b20216
SM_b20217: SM_b20217 - hypothetical protein, at 225,378 to 226,043
_b20217
SM_b20218: SM_b20218 - sensor histidine kinase, at 226,214 to 227,578
_b20218
Position (kb) 225
226
227 Strain fitness (log2 ratio) -2
-1
0
1 at 224.384 kb on + strand, within SM_b20216 at 224.385 kb on - strand, within SM_b20216 at 224.596 kb on + strand, within SM_b20216 at 224.651 kb on + strand, within SM_b20216 at 224.757 kb on - strand, within SM_b20216 at 224.933 kb on + strand, within SM_b20216 at 225.259 kb on + strand at 225.259 kb on + strand at 225.277 kb on + strand at 225.277 kb on + strand at 225.277 kb on + strand at 225.277 kb on + strand at 225.277 kb on + strand at 225.278 kb on - strand at 225.419 kb on + strand at 225.419 kb on + strand at 225.435 kb on - strand at 225.545 kb on + strand, within SM_b20217 at 225.624 kb on + strand, within SM_b20217 at 225.694 kb on + strand, within SM_b20217 at 225.735 kb on + strand, within SM_b20217 at 225.736 kb on - strand, within SM_b20217 at 225.787 kb on - strand, within SM_b20217 at 225.796 kb on - strand, within SM_b20217 at 225.796 kb on - strand, within SM_b20217 at 226.002 kb on + strand at 226.142 kb on - strand at 226.470 kb on - strand, within SM_b20218 at 226.470 kb on - strand, within SM_b20218 at 226.676 kb on + strand, within SM_b20218 at 226.885 kb on - strand, within SM_b20218
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 224,384 + SM_b20216 0.26 +0.3 224,385 - SM_b20216 0.26 +0.1 224,596 + SM_b20216 0.46 +0.3 224,651 + SM_b20216 0.51 +0.1 224,757 - SM_b20216 0.61 -0.3 224,933 + SM_b20216 0.78 -0.0 225,259 + +0.2 225,259 + +0.1 225,277 + -0.6 225,277 + +0.2 225,277 + -1.2 225,277 + -1.1 225,277 + +0.1 225,278 - +0.8 225,419 + -0.4 225,419 + -0.3 225,435 - +0.1 225,545 + SM_b20217 0.25 +0.6 225,624 + SM_b20217 0.37 -2.1 225,694 + SM_b20217 0.47 -0.2 225,735 + SM_b20217 0.54 -1.0 225,736 - SM_b20217 0.54 -1.1 225,787 - SM_b20217 0.61 -0.9 225,796 - SM_b20217 0.63 -1.9 225,796 - SM_b20217 0.63 +0.0 226,002 + +0.2 226,142 - -0.3 226,470 - SM_b20218 0.19 -1.5 226,470 - SM_b20218 0.19 -0.6 226,676 + SM_b20218 0.34 +1.3 226,885 - SM_b20218 0.49 +0.3
Or see this region's nucleotide sequence