Experiment: Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS21705 and RALBFv3_RS21710 are separated by 22 nucleotides RALBFv3_RS21710 and RALBFv3_RS21715 are separated by 32 nucleotides RALBFv3_RS21715 and RALBFv3_RS21720 are separated by 41 nucleotides RALBFv3_RS21720 and RALBFv3_RS21725 are separated by 13 nucleotides
RALBFv3_RS21705: RALBFv3_RS21705 - flagellar basal body P-ring protein FlgI, at 1,597,079 to 1,598,185
_RS21705
RALBFv3_RS21710: RALBFv3_RS21710 - flagellar L-ring protein FlgH, at 1,598,208 to 1,598,942
_RS21710
RALBFv3_RS21715: RALBFv3_RS21715 - flagellar basal-body rod protein FlgG, at 1,598,975 to 1,599,757
_RS21715
RALBFv3_RS21720: RALBFv3_RS21720 - flagellar basal-body rod protein FlgF, at 1,599,799 to 1,600,536
_RS21720
RALBFv3_RS21725: RALBFv3_RS21725 - flagellar hook protein FlgE, at 1,600,550 to 1,601,755
_RS21725
Position (kb) 1598
1599
1600 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1598.175 kb on + strand at 1598.272 kb on + strand at 1598.273 kb on - strand at 1598.746 kb on + strand, within RALBFv3_RS21710 at 1598.747 kb on - strand, within RALBFv3_RS21710 at 1598.936 kb on + strand at 1598.937 kb on - strand at 1598.937 kb on - strand at 1598.937 kb on - strand at 1598.956 kb on + strand at 1598.957 kb on - strand at 1598.957 kb on - strand at 1599.039 kb on + strand at 1599.039 kb on + strand at 1599.040 kb on - strand at 1599.106 kb on - strand, within RALBFv3_RS21715 at 1599.106 kb on - strand, within RALBFv3_RS21715 at 1599.183 kb on + strand, within RALBFv3_RS21715 at 1599.416 kb on - strand, within RALBFv3_RS21715 at 1599.417 kb on + strand, within RALBFv3_RS21715 at 1599.417 kb on + strand, within RALBFv3_RS21715 at 1599.418 kb on - strand, within RALBFv3_RS21715 at 1600.241 kb on + strand, within RALBFv3_RS21720 at 1600.242 kb on - strand, within RALBFv3_RS21720 at 1600.411 kb on - strand, within RALBFv3_RS21720 at 1600.520 kb on + strand at 1600.521 kb on - strand at 1600.521 kb on - strand at 1600.521 kb on - strand at 1600.548 kb on - strand at 1600.548 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 1,598,175 + +1.0 1,598,272 + -0.0 1,598,273 - -0.1 1,598,746 + RALBFv3_RS21710 0.73 -0.3 1,598,747 - RALBFv3_RS21710 0.73 +0.4 1,598,936 + -0.0 1,598,937 - +0.7 1,598,937 - -1.2 1,598,937 - +0.7 1,598,956 + +1.0 1,598,957 - -1.0 1,598,957 - -0.4 1,599,039 + -0.4 1,599,039 + -1.1 1,599,040 - -1.2 1,599,106 - RALBFv3_RS21715 0.17 -0.1 1,599,106 - RALBFv3_RS21715 0.17 +1.0 1,599,183 + RALBFv3_RS21715 0.27 +0.1 1,599,416 - RALBFv3_RS21715 0.56 +0.2 1,599,417 + RALBFv3_RS21715 0.56 +0.6 1,599,417 + RALBFv3_RS21715 0.56 -1.3 1,599,418 - RALBFv3_RS21715 0.57 +2.0 1,600,241 + RALBFv3_RS21720 0.60 +0.6 1,600,242 - RALBFv3_RS21720 0.60 +1.2 1,600,411 - RALBFv3_RS21720 0.83 +0.5 1,600,520 + +0.4 1,600,521 - -2.1 1,600,521 - -1.3 1,600,521 - +1.5 1,600,548 - +2.9 1,600,548 - +1.6
Or see this region's nucleotide sequence