Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS14885

Experiment: Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRALBFv3_RS14880 and RALBFv3_RS14885 are separated by 24 nucleotidesRALBFv3_RS14885 and RALBFv3_RS14890 are separated by 119 nucleotides RALBFv3_RS14880: RALBFv3_RS14880 - tryptophan--tRNA ligase, at 3,240,801 to 3,242,003 _RS14880 RALBFv3_RS14885: RALBFv3_RS14885 - class I SAM-dependent methyltransferase, at 3,242,028 to 3,242,594 _RS14885 RALBFv3_RS14890: RALBFv3_RS14890 - 4-hydroxy-tetrahydrodipicolinate synthase, at 3,242,714 to 3,243,598 _RS14890 Position (kb) 3242 3243Strain fitness (log2 ratio) -2 -1 0 1at 3241.995 kb on + strandat 3241.995 kb on + strandat 3242.316 kb on + strand, within RALBFv3_RS14885at 3242.379 kb on + strand, within RALBFv3_RS14885at 3242.657 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
remove
3,241,995 + -0.5
3,241,995 + +1.4
3,242,316 + RALBFv3_RS14885 0.51 -0.7
3,242,379 + RALBFv3_RS14885 0.62 -0.3
3,242,657 + -1.8

Or see this region's nucleotide sequence