Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS02185

Experiment: Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS02175 and RALBFv3_RS02180 are separated by 55 nucleotidesRALBFv3_RS02180 and RALBFv3_RS02185 are separated by 20 nucleotidesRALBFv3_RS02185 and RALBFv3_RS02190 are separated by 198 nucleotides RALBFv3_RS02175: RALBFv3_RS02175 - RNA-binding protein, at 486,003 to 486,500 _RS02175 RALBFv3_RS02180: RALBFv3_RS02180 - DUF4149 domain-containing protein, at 486,556 to 487,023 _RS02180 RALBFv3_RS02185: RALBFv3_RS02185 - transcription elongation factor GreA, at 487,044 to 487,520 _RS02185 RALBFv3_RS02190: RALBFv3_RS02190 - carbamoyl-phosphate synthase large subunit, at 487,719 to 490,964 _RS02190 Position (kb) 487 488Strain fitness (log2 ratio) -2 -1 0 1 2at 487.072 kb on + strandat 487.120 kb on + strand, within RALBFv3_RS02185at 487.575 kb on + strandat 487.630 kb on + strandat 487.631 kb on - strandat 487.721 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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487,072 + +1.9
487,120 + RALBFv3_RS02185 0.16 -1.7
487,575 + -0.0
487,630 + -2.0
487,631 - -0.7
487,721 - -0.3

Or see this region's nucleotide sequence