Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4213

Experiment: KB with Hydrastine (1R, 9S) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4212 and Psyr_4213 overlap by 4 nucleotidesPsyr_4213 and Psyr_4214 overlap by 4 nucleotidesPsyr_4214 and Psyr_4215 overlap by 4 nucleotides Psyr_4212: Psyr_4212 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal, at 5,017,555 to 5,018,535 _4212 Psyr_4213: Psyr_4213 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal, at 5,018,532 to 5,019,524 _4213 Psyr_4214: Psyr_4214 - Binding-protein-dependent transport systems inner membrane component, at 5,019,521 to 5,020,384 _4214 Psyr_4215: Psyr_4215 - Binding-protein-dependent transport systems inner membrane component, at 5,020,381 to 5,021,328 _4215 Position (kb) 5018 5019 5020Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5017.778 kb on + strand, within Psyr_4212at 5017.778 kb on + strand, within Psyr_4212at 5017.779 kb on - strand, within Psyr_4212at 5017.841 kb on + strand, within Psyr_4212at 5017.841 kb on + strand, within Psyr_4212at 5017.841 kb on + strand, within Psyr_4212at 5017.841 kb on + strand, within Psyr_4212at 5017.841 kb on + strand, within Psyr_4212at 5017.841 kb on + strand, within Psyr_4212at 5017.841 kb on + strand, within Psyr_4212at 5017.841 kb on + strand, within Psyr_4212at 5017.841 kb on + strand, within Psyr_4212at 5017.841 kb on + strand, within Psyr_4212at 5017.842 kb on - strand, within Psyr_4212at 5017.842 kb on - strand, within Psyr_4212at 5017.842 kb on - strand, within Psyr_4212at 5017.842 kb on - strand, within Psyr_4212at 5017.842 kb on - strand, within Psyr_4212at 5017.842 kb on - strand, within Psyr_4212at 5017.842 kb on - strand, within Psyr_4212at 5018.325 kb on + strand, within Psyr_4212at 5018.326 kb on - strand, within Psyr_4212at 5018.326 kb on - strand, within Psyr_4212at 5018.326 kb on - strand, within Psyr_4212at 5018.521 kb on + strandat 5018.522 kb on - strandat 5018.614 kb on - strandat 5018.770 kb on + strand, within Psyr_4213at 5018.770 kb on + strand, within Psyr_4213at 5018.770 kb on + strand, within Psyr_4213at 5018.770 kb on + strand, within Psyr_4213at 5018.771 kb on - strand, within Psyr_4213at 5018.833 kb on + strand, within Psyr_4213at 5018.834 kb on - strand, within Psyr_4213at 5018.834 kb on - strand, within Psyr_4213at 5018.834 kb on - strand, within Psyr_4213at 5019.071 kb on + strand, within Psyr_4213at 5019.519 kb on - strandat 5019.702 kb on + strand, within Psyr_4214at 5019.702 kb on + strand, within Psyr_4214at 5019.702 kb on + strand, within Psyr_4214at 5019.703 kb on - strand, within Psyr_4214at 5019.803 kb on - strand, within Psyr_4214at 5019.891 kb on + strand, within Psyr_4214at 5019.892 kb on - strand, within Psyr_4214at 5019.892 kb on - strand, within Psyr_4214at 5019.892 kb on - strand, within Psyr_4214at 5019.892 kb on - strand, within Psyr_4214at 5019.924 kb on + strand, within Psyr_4214at 5019.925 kb on - strand, within Psyr_4214at 5019.925 kb on - strand, within Psyr_4214at 5019.925 kb on - strand, within Psyr_4214at 5019.925 kb on - strand, within Psyr_4214at 5019.925 kb on - strand, within Psyr_4214at 5020.044 kb on + strand, within Psyr_4214at 5020.224 kb on + strand, within Psyr_4214at 5020.224 kb on + strand, within Psyr_4214at 5020.225 kb on - strand, within Psyr_4214at 5020.236 kb on + strand, within Psyr_4214at 5020.236 kb on + strand, within Psyr_4214at 5020.236 kb on + strand, within Psyr_4214at 5020.237 kb on - strand, within Psyr_4214at 5020.268 kb on + strand, within Psyr_4214at 5020.268 kb on + strand, within Psyr_4214at 5020.287 kb on - strand, within Psyr_4214at 5020.390 kb on - strandat 5020.490 kb on + strand, within Psyr_4215at 5020.490 kb on + strand, within Psyr_4215at 5020.490 kb on + strand, within Psyr_4215at 5020.490 kb on + strand, within Psyr_4215at 5020.490 kb on + strand, within Psyr_4215at 5020.490 kb on + strand, within Psyr_4215at 5020.491 kb on - strand, within Psyr_4215at 5020.491 kb on - strand, within Psyr_4215at 5020.491 kb on - strand, within Psyr_4215at 5020.491 kb on - strand, within Psyr_4215

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Hydrastine (1R, 9S) 10 mM
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5,017,778 + Psyr_4212 0.23 -0.3
5,017,778 + Psyr_4212 0.23 +0.1
5,017,779 - Psyr_4212 0.23 -0.2
5,017,841 + Psyr_4212 0.29 +0.1
5,017,841 + Psyr_4212 0.29 +1.5
5,017,841 + Psyr_4212 0.29 -0.1
5,017,841 + Psyr_4212 0.29 -1.5
5,017,841 + Psyr_4212 0.29 +0.3
5,017,841 + Psyr_4212 0.29 -0.1
5,017,841 + Psyr_4212 0.29 -0.3
5,017,841 + Psyr_4212 0.29 +0.5
5,017,841 + Psyr_4212 0.29 +0.9
5,017,841 + Psyr_4212 0.29 -0.3
5,017,842 - Psyr_4212 0.29 -1.1
5,017,842 - Psyr_4212 0.29 -1.2
5,017,842 - Psyr_4212 0.29 -0.7
5,017,842 - Psyr_4212 0.29 +3.7
5,017,842 - Psyr_4212 0.29 +0.4
5,017,842 - Psyr_4212 0.29 +0.1
5,017,842 - Psyr_4212 0.29 -0.2
5,018,325 + Psyr_4212 0.78 -0.6
5,018,326 - Psyr_4212 0.79 -0.1
5,018,326 - Psyr_4212 0.79 +0.2
5,018,326 - Psyr_4212 0.79 +1.9
5,018,521 + +0.1
5,018,522 - -0.8
5,018,614 - -1.3
5,018,770 + Psyr_4213 0.24 -0.1
5,018,770 + Psyr_4213 0.24 -0.8
5,018,770 + Psyr_4213 0.24 -1.4
5,018,770 + Psyr_4213 0.24 +1.3
5,018,771 - Psyr_4213 0.24 -0.9
5,018,833 + Psyr_4213 0.30 -2.2
5,018,834 - Psyr_4213 0.30 +0.9
5,018,834 - Psyr_4213 0.30 -1.8
5,018,834 - Psyr_4213 0.30 -1.0
5,019,071 + Psyr_4213 0.54 -1.3
5,019,519 - +0.5
5,019,702 + Psyr_4214 0.21 +0.4
5,019,702 + Psyr_4214 0.21 -0.6
5,019,702 + Psyr_4214 0.21 +1.1
5,019,703 - Psyr_4214 0.21 +0.9
5,019,803 - Psyr_4214 0.33 +0.0
5,019,891 + Psyr_4214 0.43 +1.9
5,019,892 - Psyr_4214 0.43 +0.7
5,019,892 - Psyr_4214 0.43 +0.2
5,019,892 - Psyr_4214 0.43 +0.9
5,019,892 - Psyr_4214 0.43 +0.8
5,019,924 + Psyr_4214 0.47 +1.4
5,019,925 - Psyr_4214 0.47 +1.3
5,019,925 - Psyr_4214 0.47 +0.3
5,019,925 - Psyr_4214 0.47 +0.8
5,019,925 - Psyr_4214 0.47 -0.5
5,019,925 - Psyr_4214 0.47 -0.9
5,020,044 + Psyr_4214 0.61 +0.4
5,020,224 + Psyr_4214 0.81 -0.2
5,020,224 + Psyr_4214 0.81 +0.7
5,020,225 - Psyr_4214 0.81 -1.2
5,020,236 + Psyr_4214 0.83 +0.9
5,020,236 + Psyr_4214 0.83 +0.1
5,020,236 + Psyr_4214 0.83 +0.3
5,020,237 - Psyr_4214 0.83 +0.4
5,020,268 + Psyr_4214 0.86 -0.4
5,020,268 + Psyr_4214 0.86 -0.8
5,020,287 - Psyr_4214 0.89 -0.7
5,020,390 - +0.3
5,020,490 + Psyr_4215 0.11 +0.4
5,020,490 + Psyr_4215 0.11 +1.3
5,020,490 + Psyr_4215 0.11 -0.2
5,020,490 + Psyr_4215 0.11 -1.5
5,020,490 + Psyr_4215 0.11 -0.0
5,020,490 + Psyr_4215 0.11 -0.1
5,020,491 - Psyr_4215 0.12 +0.1
5,020,491 - Psyr_4215 0.12 -1.2
5,020,491 - Psyr_4215 0.12 +0.1
5,020,491 - Psyr_4215 0.12 -0.6

Or see this region's nucleotide sequence