Experiment: KB with Hydrastine (1R, 9S) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3419 and Psyr_3420 are separated by 10 nucleotides Psyr_3420 and Psyr_3421 are separated by 2 nucleotides Psyr_3421 and Psyr_3422 are separated by 108 nucleotides Psyr_3422 and Psyr_3423 are separated by 95 nucleotides
Psyr_3419: Psyr_3419 - 4Fe-4S ferredoxin, iron-sulfur binding protein, at 4,082,060 to 4,083,472
_3419
Psyr_3420: Psyr_3420 - conserved hypothetical protein, at 4,083,483 to 4,084,019
_3420
Psyr_3421: Psyr_3421 - Copper-translocating P-type ATPase:Heavy metal translocating P-type ATPase, at 4,084,022 to 4,086,496
_3421
Psyr_3422: Psyr_3422 - membrane protein, putative, at 4,086,605 to 4,087,354
_3422
Psyr_3423: Psyr_3423 - coproporphyrinogen III oxidase, anaerobic, at 4,087,450 to 4,088,835
_3423
Position (kb) 4084
4085
4086
4087 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4083.255 kb on - strand, within Psyr_3419 at 4083.463 kb on + strand at 4083.463 kb on + strand at 4083.463 kb on + strand at 4083.464 kb on - strand at 4083.464 kb on - strand at 4083.627 kb on + strand, within Psyr_3420 at 4083.627 kb on + strand, within Psyr_3420 at 4083.627 kb on + strand, within Psyr_3420 at 4083.627 kb on + strand at 4083.627 kb on + strand, within Psyr_3420 at 4083.627 kb on + strand, within Psyr_3420 at 4083.627 kb on + strand, within Psyr_3420 at 4083.630 kb on + strand, within Psyr_3420 at 4086.487 kb on + strand at 4086.487 kb on + strand at 4086.487 kb on + strand at 4086.487 kb on + strand at 4086.487 kb on + strand at 4087.296 kb on + strand at 4087.361 kb on + strand at 4087.493 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Hydrastine (1R, 9S) 10 mM remove 4,083,255 - Psyr_3419 0.85 +0.8 4,083,463 + -0.9 4,083,463 + +0.1 4,083,463 + -2.4 4,083,464 - -1.0 4,083,464 - -0.2 4,083,627 + Psyr_3420 0.27 +0.1 4,083,627 + Psyr_3420 0.27 -1.2 4,083,627 + Psyr_3420 0.27 -1.6 4,083,627 + +1.8 4,083,627 + Psyr_3420 0.27 -0.6 4,083,627 + Psyr_3420 0.27 +0.8 4,083,627 + Psyr_3420 0.27 -0.1 4,083,630 + Psyr_3420 0.27 -0.5 4,086,487 + +0.1 4,086,487 + +0.0 4,086,487 + +1.8 4,086,487 + -0.7 4,086,487 + +0.3 4,087,296 + -1.5 4,087,361 + +3.1 4,087,493 - -0.2
Or see this region's nucleotide sequence