Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3169

Experiment: KB with Hydrastine (1R, 9S) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3167 and Psyr_3168 are separated by 234 nucleotidesPsyr_3168 and Psyr_3169 are separated by 1 nucleotidesPsyr_3169 and Psyr_3170 overlap by 1 nucleotidesPsyr_3170 and Psyr_3171 overlap by 4 nucleotidesPsyr_3171 and Psyr_3172 overlap by 4 nucleotides Psyr_3167: Psyr_3167 - Citrate-proton symport, at 3,795,830 to 3,797,131 _3167 Psyr_3168: Psyr_3168 - DsrE-like protein, at 3,797,366 to 3,797,758 _3168 Psyr_3169: Psyr_3169 - DsrE-like protein, at 3,797,760 to 3,798,122 _3169 Psyr_3170: Psyr_3170 - DsrH like protein, at 3,798,122 to 3,798,421 _3170 Psyr_3171: Psyr_3171 - DsrC-like protein, at 3,798,418 to 3,798,753 _3171 Psyr_3172: Psyr_3172 - Glycosyl transferase, family 3, at 3,798,750 to 3,799,751 _3172 Position (kb) 3797 3798 3799Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3796.890 kb on + strand, within Psyr_3167at 3796.891 kb on - strand, within Psyr_3167at 3796.891 kb on - strand, within Psyr_3167at 3796.891 kb on - strand, within Psyr_3167at 3796.891 kb on - strand, within Psyr_3167at 3796.891 kb on - strand, within Psyr_3167at 3796.891 kb on - strand, within Psyr_3167at 3797.016 kb on + strandat 3797.016 kb on + strandat 3797.016 kb on + strandat 3797.016 kb on + strandat 3797.016 kb on + strandat 3797.016 kb on + strandat 3797.016 kb on + strandat 3797.017 kb on - strandat 3797.017 kb on - strandat 3797.017 kb on - strandat 3797.076 kb on - strandat 3797.111 kb on + strandat 3797.154 kb on + strandat 3797.154 kb on + strandat 3797.154 kb on + strandat 3797.154 kb on + strandat 3797.154 kb on + strandat 3797.154 kb on + strandat 3797.155 kb on - strandat 3797.155 kb on - strandat 3797.164 kb on + strandat 3797.165 kb on - strandat 3797.209 kb on + strandat 3797.209 kb on + strandat 3797.210 kb on - strandat 3798.760 kb on - strandat 3798.978 kb on - strand, within Psyr_3172at 3799.041 kb on + strand, within Psyr_3172at 3799.041 kb on + strand, within Psyr_3172at 3799.041 kb on + strand, within Psyr_3172at 3799.042 kb on - strand, within Psyr_3172at 3799.042 kb on - strand, within Psyr_3172at 3799.071 kb on + strand, within Psyr_3172at 3799.072 kb on - strand, within Psyr_3172

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Hydrastine (1R, 9S) 10 mM
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3,796,890 + Psyr_3167 0.81 -0.8
3,796,891 - Psyr_3167 0.81 -2.0
3,796,891 - Psyr_3167 0.81 +3.3
3,796,891 - Psyr_3167 0.81 -1.6
3,796,891 - Psyr_3167 0.81 +0.6
3,796,891 - Psyr_3167 0.81 +0.6
3,796,891 - Psyr_3167 0.81 -2.7
3,797,016 + -2.6
3,797,016 + +0.4
3,797,016 + +0.4
3,797,016 + -1.3
3,797,016 + -0.2
3,797,016 + +0.7
3,797,016 + +1.1
3,797,017 - +1.3
3,797,017 - -0.4
3,797,017 - +1.8
3,797,076 - -1.3
3,797,111 + -0.2
3,797,154 + +1.1
3,797,154 + -0.8
3,797,154 + +0.2
3,797,154 + -1.0
3,797,154 + -2.1
3,797,154 + +1.3
3,797,155 - +1.7
3,797,155 - -1.3
3,797,164 + +0.6
3,797,165 - +0.1
3,797,209 + +0.7
3,797,209 + +0.1
3,797,210 - +0.8
3,798,760 - +0.2
3,798,978 - Psyr_3172 0.23 -0.8
3,799,041 + Psyr_3172 0.29 +0.5
3,799,041 + Psyr_3172 0.29 +0.2
3,799,041 + Psyr_3172 0.29 +0.7
3,799,042 - Psyr_3172 0.29 +1.7
3,799,042 - Psyr_3172 0.29 +0.2
3,799,071 + Psyr_3172 0.32 -0.3
3,799,072 - Psyr_3172 0.32 -0.7

Or see this region's nucleotide sequence