Experiment: KB with Hydrastine (1R, 9S) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3167 and Psyr_3168 are separated by 234 nucleotides Psyr_3168 and Psyr_3169 are separated by 1 nucleotides Psyr_3169 and Psyr_3170 overlap by 1 nucleotides Psyr_3170 and Psyr_3171 overlap by 4 nucleotides Psyr_3171 and Psyr_3172 overlap by 4 nucleotides
Psyr_3167: Psyr_3167 - Citrate-proton symport, at 3,795,830 to 3,797,131
_3167
Psyr_3168: Psyr_3168 - DsrE-like protein, at 3,797,366 to 3,797,758
_3168
Psyr_3169: Psyr_3169 - DsrE-like protein, at 3,797,760 to 3,798,122
_3169
Psyr_3170: Psyr_3170 - DsrH like protein, at 3,798,122 to 3,798,421
_3170
Psyr_3171: Psyr_3171 - DsrC-like protein, at 3,798,418 to 3,798,753
_3171
Psyr_3172: Psyr_3172 - Glycosyl transferase, family 3, at 3,798,750 to 3,799,751
_3172
Position (kb)
3797
3798
3799 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3796.890 kb on + strand, within Psyr_3167 at 3796.891 kb on - strand, within Psyr_3167 at 3796.891 kb on - strand, within Psyr_3167 at 3796.891 kb on - strand, within Psyr_3167 at 3796.891 kb on - strand, within Psyr_3167 at 3796.891 kb on - strand, within Psyr_3167 at 3796.891 kb on - strand, within Psyr_3167 at 3797.016 kb on + strand at 3797.016 kb on + strand at 3797.016 kb on + strand at 3797.016 kb on + strand at 3797.016 kb on + strand at 3797.016 kb on + strand at 3797.016 kb on + strand at 3797.017 kb on - strand at 3797.017 kb on - strand at 3797.017 kb on - strand at 3797.076 kb on - strand at 3797.111 kb on + strand at 3797.154 kb on + strand at 3797.154 kb on + strand at 3797.154 kb on + strand at 3797.154 kb on + strand at 3797.154 kb on + strand at 3797.154 kb on + strand at 3797.155 kb on - strand at 3797.155 kb on - strand at 3797.164 kb on + strand at 3797.165 kb on - strand at 3797.209 kb on + strand at 3797.209 kb on + strand at 3797.210 kb on - strand at 3798.760 kb on - strand at 3798.978 kb on - strand, within Psyr_3172 at 3799.041 kb on + strand, within Psyr_3172 at 3799.041 kb on + strand, within Psyr_3172 at 3799.041 kb on + strand, within Psyr_3172 at 3799.042 kb on - strand, within Psyr_3172 at 3799.042 kb on - strand, within Psyr_3172 at 3799.071 kb on + strand, within Psyr_3172 at 3799.072 kb on - strand, within Psyr_3172
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Hydrastine (1R, 9S) 10 mM remove 3,796,890 + Psyr_3167 0.81 -0.8 3,796,891 - Psyr_3167 0.81 -2.0 3,796,891 - Psyr_3167 0.81 +3.3 3,796,891 - Psyr_3167 0.81 -1.6 3,796,891 - Psyr_3167 0.81 +0.6 3,796,891 - Psyr_3167 0.81 +0.6 3,796,891 - Psyr_3167 0.81 -2.7 3,797,016 + -2.6 3,797,016 + +0.4 3,797,016 + +0.4 3,797,016 + -1.3 3,797,016 + -0.2 3,797,016 + +0.7 3,797,016 + +1.1 3,797,017 - +1.3 3,797,017 - -0.4 3,797,017 - +1.8 3,797,076 - -1.3 3,797,111 + -0.2 3,797,154 + +1.1 3,797,154 + -0.8 3,797,154 + +0.2 3,797,154 + -1.0 3,797,154 + -2.1 3,797,154 + +1.3 3,797,155 - +1.7 3,797,155 - -1.3 3,797,164 + +0.6 3,797,165 - +0.1 3,797,209 + +0.7 3,797,209 + +0.1 3,797,210 - +0.8 3,798,760 - +0.2 3,798,978 - Psyr_3172 0.23 -0.8 3,799,041 + Psyr_3172 0.29 +0.5 3,799,041 + Psyr_3172 0.29 +0.2 3,799,041 + Psyr_3172 0.29 +0.7 3,799,042 - Psyr_3172 0.29 +1.7 3,799,042 - Psyr_3172 0.29 +0.2 3,799,071 + Psyr_3172 0.32 -0.3 3,799,072 - Psyr_3172 0.32 -0.7
Or see this region's nucleotide sequence