Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2759

Experiment: KB with Hydrastine (1R, 9S) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2758 and Psyr_2759 are separated by 89 nucleotidesPsyr_2759 and Psyr_RNA43 are separated by 167 nucleotidesPsyr_RNA43 and Psyr_2760 are separated by 186 nucleotidesPsyr_2760 and Psyr_2761 are separated by 46 nucleotides Psyr_2758: Psyr_2758 - ABC transporter:TOBE, at 3,345,625 to 3,346,713 _2758 Psyr_2759: Psyr_2759 - Eukaryotic-like DNA topoisomerase I, at 3,346,803 to 3,347,873 _2759 Psyr_RNA43: Psyr_RNA43 - tRNA-Leu, at 3,348,041 to 3,348,126 _RNA43 Psyr_2760: Psyr_2760 - hypothetical protein, at 3,348,313 to 3,348,675 _2760 Psyr_2761: Psyr_2761 - DNA-directed DNA polymerase, at 3,348,722 to 3,350,002 _2761 Position (kb) 3346 3347 3348Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3345.871 kb on + strand, within Psyr_2758at 3346.195 kb on + strand, within Psyr_2758at 3346.195 kb on + strand, within Psyr_2758at 3346.196 kb on - strand, within Psyr_2758at 3346.196 kb on - strand, within Psyr_2758at 3346.196 kb on - strand, within Psyr_2758at 3346.266 kb on - strand, within Psyr_2758at 3346.366 kb on + strand, within Psyr_2758at 3346.366 kb on + strand, within Psyr_2758at 3346.367 kb on - strand, within Psyr_2758at 3346.367 kb on - strand, within Psyr_2758at 3346.367 kb on - strand, within Psyr_2758at 3346.379 kb on - strand, within Psyr_2758at 3346.636 kb on + strandat 3346.743 kb on + strandat 3346.758 kb on + strandat 3346.782 kb on - strandat 3346.798 kb on + strandat 3346.798 kb on + strandat 3346.798 kb on + strandat 3346.798 kb on + strandat 3346.799 kb on - strandat 3346.799 kb on - strandat 3346.848 kb on + strandat 3346.849 kb on - strandat 3346.852 kb on + strandat 3346.852 kb on + strandat 3346.852 kb on + strandat 3346.853 kb on - strandat 3346.853 kb on - strandat 3346.874 kb on + strandat 3346.886 kb on - strandat 3346.886 kb on - strandat 3346.905 kb on + strandat 3346.906 kb on - strandat 3347.089 kb on + strand, within Psyr_2759at 3347.089 kb on + strand, within Psyr_2759at 3347.090 kb on - strand, within Psyr_2759at 3347.107 kb on - strand, within Psyr_2759at 3347.259 kb on + strand, within Psyr_2759at 3347.259 kb on + strand, within Psyr_2759at 3347.369 kb on + strand, within Psyr_2759at 3347.369 kb on + strand, within Psyr_2759at 3347.369 kb on + strand, within Psyr_2759at 3347.370 kb on - strand, within Psyr_2759at 3347.370 kb on - strand, within Psyr_2759at 3347.468 kb on - strand, within Psyr_2759at 3347.503 kb on - strand, within Psyr_2759at 3347.695 kb on - strand, within Psyr_2759at 3347.695 kb on - strand, within Psyr_2759at 3347.695 kb on - strand, within Psyr_2759at 3347.695 kb on - strand, within Psyr_2759at 3347.802 kb on + strandat 3347.802 kb on + strandat 3347.846 kb on + strandat 3347.970 kb on + strandat 3347.971 kb on - strandat 3348.014 kb on + strandat 3348.014 kb on + strandat 3348.014 kb on + strandat 3348.016 kb on + strandat 3348.016 kb on + strandat 3348.016 kb on + strandat 3348.016 kb on + strandat 3348.016 kb on + strandat 3348.016 kb on + strandat 3348.016 kb on + strandat 3348.018 kb on + strandat 3348.018 kb on + strandat 3348.018 kb on + strandat 3348.018 kb on + strandat 3348.191 kb on + strandat 3348.191 kb on + strandat 3348.191 kb on + strandat 3348.192 kb on - strandat 3348.276 kb on + strandat 3348.281 kb on + strandat 3348.402 kb on + strand, within Psyr_2760at 3348.403 kb on - strand, within Psyr_2760at 3348.403 kb on - strand, within Psyr_2760at 3348.403 kb on - strand, within Psyr_2760at 3348.423 kb on - strand, within Psyr_2760at 3348.435 kb on + strand, within Psyr_2760at 3348.531 kb on + strand, within Psyr_2760at 3348.531 kb on + strand, within Psyr_2760at 3348.531 kb on + strand, within Psyr_2760at 3348.531 kb on + strand, within Psyr_2760at 3348.531 kb on + strand, within Psyr_2760at 3348.531 kb on + strand, within Psyr_2760at 3348.531 kb on + strand, within Psyr_2760at 3348.531 kb on + strand, within Psyr_2760at 3348.531 kb on + strand, within Psyr_2760at 3348.531 kb on + strand, within Psyr_2760at 3348.531 kb on + strand, within Psyr_2760at 3348.532 kb on - strand, within Psyr_2760at 3348.532 kb on - strand, within Psyr_2760at 3348.532 kb on - strand, within Psyr_2760at 3348.765 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Hydrastine (1R, 9S) 10 mM
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3,345,871 + Psyr_2758 0.23 -0.4
3,346,195 + Psyr_2758 0.52 -0.4
3,346,195 + Psyr_2758 0.52 +3.6
3,346,196 - Psyr_2758 0.52 -0.2
3,346,196 - Psyr_2758 0.52 -0.3
3,346,196 - Psyr_2758 0.52 +0.3
3,346,266 - Psyr_2758 0.59 -0.5
3,346,366 + Psyr_2758 0.68 -0.9
3,346,366 + Psyr_2758 0.68 -0.0
3,346,367 - Psyr_2758 0.68 +0.3
3,346,367 - Psyr_2758 0.68 -1.4
3,346,367 - Psyr_2758 0.68 +0.1
3,346,379 - Psyr_2758 0.69 -0.3
3,346,636 + +0.1
3,346,743 + -0.4
3,346,758 + +0.2
3,346,782 - +0.6
3,346,798 + +0.3
3,346,798 + -1.8
3,346,798 + -1.1
3,346,798 + -2.7
3,346,799 - +0.6
3,346,799 - +0.3
3,346,848 + -0.5
3,346,849 - -0.1
3,346,852 + +1.5
3,346,852 + +0.8
3,346,852 + +0.7
3,346,853 - +2.6
3,346,853 - -0.8
3,346,874 + +0.7
3,346,886 - +0.3
3,346,886 - -0.5
3,346,905 + +0.8
3,346,906 - -1.2
3,347,089 + Psyr_2759 0.27 -0.0
3,347,089 + Psyr_2759 0.27 +0.8
3,347,090 - Psyr_2759 0.27 -1.1
3,347,107 - Psyr_2759 0.28 +2.3
3,347,259 + Psyr_2759 0.43 -0.4
3,347,259 + Psyr_2759 0.43 +0.3
3,347,369 + Psyr_2759 0.53 +0.9
3,347,369 + Psyr_2759 0.53 +0.1
3,347,369 + Psyr_2759 0.53 -0.0
3,347,370 - Psyr_2759 0.53 +0.3
3,347,370 - Psyr_2759 0.53 +0.6
3,347,468 - Psyr_2759 0.62 +1.3
3,347,503 - Psyr_2759 0.65 -0.1
3,347,695 - Psyr_2759 0.83 +2.3
3,347,695 - Psyr_2759 0.83 -0.1
3,347,695 - Psyr_2759 0.83 +0.5
3,347,695 - Psyr_2759 0.83 -2.1
3,347,802 + +2.4
3,347,802 + +1.5
3,347,846 + +0.6
3,347,970 + -0.1
3,347,971 - -0.1
3,348,014 + -1.3
3,348,014 + +0.7
3,348,014 + -0.2
3,348,016 + +0.2
3,348,016 + +0.7
3,348,016 + +1.8
3,348,016 + +1.1
3,348,016 + +0.5
3,348,016 + +0.7
3,348,016 + -1.7
3,348,018 + +0.6
3,348,018 + +0.8
3,348,018 + +0.3
3,348,018 + -0.4
3,348,191 + +0.4
3,348,191 + -0.2
3,348,191 + -0.4
3,348,192 - -0.4
3,348,276 + +0.3
3,348,281 + +1.4
3,348,402 + Psyr_2760 0.25 +0.3
3,348,403 - Psyr_2760 0.25 +3.7
3,348,403 - Psyr_2760 0.25 +0.7
3,348,403 - Psyr_2760 0.25 +0.9
3,348,423 - Psyr_2760 0.30 -0.5
3,348,435 + Psyr_2760 0.34 -1.3
3,348,531 + Psyr_2760 0.60 +0.3
3,348,531 + Psyr_2760 0.60 +0.1
3,348,531 + Psyr_2760 0.60 +1.2
3,348,531 + Psyr_2760 0.60 -0.0
3,348,531 + Psyr_2760 0.60 -0.8
3,348,531 + Psyr_2760 0.60 +0.2
3,348,531 + Psyr_2760 0.60 -2.3
3,348,531 + Psyr_2760 0.60 -2.1
3,348,531 + Psyr_2760 0.60 +0.3
3,348,531 + Psyr_2760 0.60 -0.6
3,348,531 + Psyr_2760 0.60 +3.9
3,348,532 - Psyr_2760 0.60 +0.4
3,348,532 - Psyr_2760 0.60 -1.9
3,348,532 - Psyr_2760 0.60 -0.7
3,348,765 + +1.2

Or see this region's nucleotide sequence