Experiment: KB with Hydrastine (1R, 9S) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1574 and Psyr_1575 are separated by 132 nucleotides Psyr_1575 and Psyr_1576 are separated by 76 nucleotides Psyr_1576 and Psyr_1577 are separated by 46 nucleotides Psyr_1577 and Psyr_1578 are separated by 37 nucleotides
Psyr_1574: Psyr_1574 - oligopeptidase B, Serine peptidase, MEROPS family S09A, at 1,768,583 to 1,770,643
_1574
Psyr_1575: Psyr_1575 - conserved hypothetical protein, at 1,770,776 to 1,771,252
_1575
Psyr_1576: Psyr_1576 - Glutamine amidotransferase, class-II, at 1,771,329 to 1,772,129
_1576
Psyr_1577: Psyr_1577 - conserved hypothetical protein, at 1,772,176 to 1,772,700
_1577
Psyr_1578: Psyr_1578 - conserved hypothetical protein, at 1,772,738 to 1,773,454
_1578
Position (kb) 1771
1772
1773 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1770.369 kb on + strand, within Psyr_1574 at 1770.370 kb on - strand, within Psyr_1574 at 1770.370 kb on - strand, within Psyr_1574 at 1770.396 kb on + strand, within Psyr_1574 at 1770.397 kb on - strand, within Psyr_1574 at 1770.397 kb on - strand, within Psyr_1574 at 1770.399 kb on + strand, within Psyr_1574 at 1770.405 kb on + strand, within Psyr_1574 at 1770.406 kb on - strand, within Psyr_1574 at 1770.406 kb on - strand, within Psyr_1574 at 1770.580 kb on - strand at 1770.659 kb on - strand at 1770.678 kb on + strand at 1770.743 kb on - strand at 1770.763 kb on + strand at 1770.791 kb on + strand at 1770.920 kb on - strand, within Psyr_1575 at 1770.920 kb on - strand, within Psyr_1575 at 1770.920 kb on - strand, within Psyr_1575 at 1771.009 kb on + strand, within Psyr_1575 at 1771.010 kb on - strand, within Psyr_1575 at 1771.040 kb on + strand, within Psyr_1575 at 1771.040 kb on + strand, within Psyr_1575 at 1771.040 kb on + strand, within Psyr_1575 at 1771.040 kb on + strand, within Psyr_1575 at 1771.040 kb on + strand, within Psyr_1575 at 1771.040 kb on + strand, within Psyr_1575 at 1771.040 kb on + strand, within Psyr_1575 at 1771.040 kb on + strand, within Psyr_1575 at 1771.040 kb on + strand, within Psyr_1575 at 1771.040 kb on + strand, within Psyr_1575 at 1771.040 kb on + strand, within Psyr_1575 at 1771.040 kb on + strand, within Psyr_1575 at 1771.040 kb on + strand, within Psyr_1575 at 1771.040 kb on + strand, within Psyr_1575 at 1771.040 kb on + strand, within Psyr_1575 at 1771.040 kb on + strand, within Psyr_1575 at 1771.040 kb on + strand, within Psyr_1575 at 1771.040 kb on + strand, within Psyr_1575 at 1771.040 kb on + strand, within Psyr_1575 at 1771.040 kb on + strand, within Psyr_1575 at 1771.040 kb on + strand, within Psyr_1575 at 1771.040 kb on + strand, within Psyr_1575 at 1771.040 kb on + strand, within Psyr_1575 at 1771.040 kb on + strand, within Psyr_1575 at 1771.040 kb on + strand, within Psyr_1575 at 1771.040 kb on + strand, within Psyr_1575 at 1771.041 kb on - strand, within Psyr_1575 at 1771.041 kb on - strand, within Psyr_1575 at 1771.041 kb on - strand, within Psyr_1575 at 1771.041 kb on - strand, within Psyr_1575 at 1771.041 kb on - strand, within Psyr_1575 at 1771.041 kb on - strand, within Psyr_1575 at 1771.041 kb on - strand, within Psyr_1575 at 1771.041 kb on - strand, within Psyr_1575 at 1771.041 kb on - strand, within Psyr_1575 at 1771.041 kb on - strand, within Psyr_1575 at 1771.041 kb on - strand, within Psyr_1575 at 1771.041 kb on - strand, within Psyr_1575 at 1771.041 kb on - strand, within Psyr_1575 at 1771.041 kb on - strand, within Psyr_1575 at 1771.041 kb on - strand, within Psyr_1575 at 1771.041 kb on - strand, within Psyr_1575 at 1771.041 kb on - strand, within Psyr_1575 at 1771.041 kb on - strand, within Psyr_1575 at 1771.041 kb on - strand, within Psyr_1575 at 1771.041 kb on - strand, within Psyr_1575 at 1771.041 kb on - strand, within Psyr_1575 at 1771.041 kb on - strand, within Psyr_1575 at 1771.041 kb on - strand, within Psyr_1575 at 1771.045 kb on + strand, within Psyr_1575 at 1771.045 kb on + strand, within Psyr_1575 at 1771.045 kb on + strand, within Psyr_1575 at 1771.045 kb on + strand, within Psyr_1575 at 1771.045 kb on + strand, within Psyr_1575 at 1771.045 kb on + strand, within Psyr_1575 at 1771.045 kb on + strand, within Psyr_1575 at 1771.045 kb on + strand, within Psyr_1575 at 1771.045 kb on + strand, within Psyr_1575 at 1771.046 kb on - strand, within Psyr_1575 at 1771.046 kb on - strand, within Psyr_1575 at 1771.046 kb on - strand, within Psyr_1575 at 1771.046 kb on - strand, within Psyr_1575 at 1771.046 kb on - strand, within Psyr_1575 at 1771.046 kb on - strand, within Psyr_1575 at 1771.046 kb on - strand, within Psyr_1575 at 1771.187 kb on + strand, within Psyr_1575 at 1771.251 kb on - strand at 1771.339 kb on + strand at 1771.449 kb on + strand, within Psyr_1576 at 1771.450 kb on - strand, within Psyr_1576 at 1771.450 kb on - strand, within Psyr_1576 at 1771.559 kb on + strand, within Psyr_1576 at 1771.632 kb on - strand, within Psyr_1576 at 1771.827 kb on - strand, within Psyr_1576 at 1771.827 kb on - strand, within Psyr_1576 at 1771.883 kb on + strand, within Psyr_1576 at 1772.130 kb on + strand at 1772.131 kb on - strand at 1772.131 kb on - strand at 1772.149 kb on - strand at 1772.188 kb on + strand at 1772.257 kb on + strand, within Psyr_1577 at 1772.258 kb on - strand, within Psyr_1577 at 1772.312 kb on - strand, within Psyr_1577 at 1772.314 kb on - strand, within Psyr_1577 at 1772.368 kb on + strand, within Psyr_1577 at 1772.369 kb on - strand, within Psyr_1577 at 1772.547 kb on + strand, within Psyr_1577 at 1772.547 kb on + strand, within Psyr_1577 at 1772.547 kb on + strand, within Psyr_1577 at 1772.547 kb on + strand, within Psyr_1577 at 1772.547 kb on + strand, within Psyr_1577 at 1772.547 kb on + strand, within Psyr_1577 at 1772.547 kb on + strand, within Psyr_1577 at 1772.547 kb on + strand, within Psyr_1577 at 1772.547 kb on + strand, within Psyr_1577 at 1772.548 kb on - strand, within Psyr_1577 at 1772.548 kb on - strand, within Psyr_1577 at 1772.548 kb on - strand, within Psyr_1577 at 1772.548 kb on - strand, within Psyr_1577 at 1772.739 kb on + strand at 1772.739 kb on + strand at 1772.739 kb on + strand at 1772.739 kb on + strand at 1772.739 kb on + strand at 1772.739 kb on + strand at 1772.739 kb on + strand at 1772.739 kb on + strand at 1772.739 kb on + strand at 1772.740 kb on - strand at 1772.740 kb on - strand at 1772.740 kb on - strand at 1772.740 kb on - strand at 1772.740 kb on - strand at 1772.740 kb on - strand at 1772.740 kb on - strand at 1772.740 kb on - strand at 1772.740 kb on - strand at 1772.740 kb on - strand at 1772.741 kb on + strand at 1772.741 kb on + strand at 1772.741 kb on + strand at 1772.741 kb on + strand at 1772.741 kb on + strand at 1772.741 kb on + strand at 1772.741 kb on + strand at 1772.742 kb on - strand at 1772.742 kb on - strand at 1772.742 kb on - strand at 1772.742 kb on - strand at 1772.742 kb on - strand at 1772.761 kb on + strand at 1772.761 kb on + strand at 1772.761 kb on + strand at 1772.762 kb on - strand at 1772.762 kb on - strand at 1772.762 kb on - strand at 1772.765 kb on + strand at 1772.765 kb on + strand at 1772.765 kb on + strand at 1772.765 kb on + strand at 1772.765 kb on + strand at 1772.766 kb on - strand at 1772.766 kb on - strand at 1772.766 kb on - strand at 1772.766 kb on - strand at 1772.769 kb on + strand at 1772.888 kb on + strand, within Psyr_1578 at 1772.888 kb on + strand, within Psyr_1578 at 1772.888 kb on + strand, within Psyr_1578 at 1772.889 kb on - strand, within Psyr_1578 at 1772.889 kb on - strand, within Psyr_1578 at 1772.949 kb on + strand, within Psyr_1578 at 1772.949 kb on + strand, within Psyr_1578 at 1772.949 kb on + strand, within Psyr_1578 at 1772.950 kb on - strand, within Psyr_1578 at 1772.975 kb on + strand, within Psyr_1578 at 1772.976 kb on - strand, within Psyr_1578 at 1772.976 kb on - strand, within Psyr_1578 at 1773.062 kb on + strand, within Psyr_1578 at 1773.063 kb on - strand, within Psyr_1578 at 1773.063 kb on - strand, within Psyr_1578 at 1773.063 kb on - strand, within Psyr_1578 at 1773.063 kb on - strand, within Psyr_1578 at 1773.066 kb on + strand, within Psyr_1578
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Hydrastine (1R, 9S) 10 mM remove 1,770,369 + Psyr_1574 0.87 +0.1 1,770,370 - Psyr_1574 0.87 +0.2 1,770,370 - Psyr_1574 0.87 +0.2 1,770,396 + Psyr_1574 0.88 +1.0 1,770,397 - Psyr_1574 0.88 +0.3 1,770,397 - Psyr_1574 0.88 +0.3 1,770,399 + Psyr_1574 0.88 -0.6 1,770,405 + Psyr_1574 0.88 -0.4 1,770,406 - Psyr_1574 0.88 -1.6 1,770,406 - Psyr_1574 0.88 -0.4 1,770,580 - -0.7 1,770,659 - +0.6 1,770,678 + +0.7 1,770,743 - +1.0 1,770,763 + +1.8 1,770,791 + -0.3 1,770,920 - Psyr_1575 0.30 -1.0 1,770,920 - Psyr_1575 0.30 +0.4 1,770,920 - Psyr_1575 0.30 -0.9 1,771,009 + Psyr_1575 0.49 -0.6 1,771,010 - Psyr_1575 0.49 +0.5 1,771,040 + Psyr_1575 0.55 +0.6 1,771,040 + Psyr_1575 0.55 +0.3 1,771,040 + Psyr_1575 0.55 -0.2 1,771,040 + Psyr_1575 0.55 +2.3 1,771,040 + Psyr_1575 0.55 +2.4 1,771,040 + Psyr_1575 0.55 +1.0 1,771,040 + Psyr_1575 0.55 -0.5 1,771,040 + Psyr_1575 0.55 -2.0 1,771,040 + Psyr_1575 0.55 +0.4 1,771,040 + Psyr_1575 0.55 +0.4 1,771,040 + Psyr_1575 0.55 +1.0 1,771,040 + Psyr_1575 0.55 +0.5 1,771,040 + Psyr_1575 0.55 -0.8 1,771,040 + Psyr_1575 0.55 +0.6 1,771,040 + Psyr_1575 0.55 -0.5 1,771,040 + Psyr_1575 0.55 -0.1 1,771,040 + Psyr_1575 0.55 -1.9 1,771,040 + Psyr_1575 0.55 +0.7 1,771,040 + Psyr_1575 0.55 +0.5 1,771,040 + Psyr_1575 0.55 -0.1 1,771,040 + Psyr_1575 0.55 -0.4 1,771,040 + Psyr_1575 0.55 +0.9 1,771,040 + Psyr_1575 0.55 +1.4 1,771,040 + Psyr_1575 0.55 +0.7 1,771,040 + Psyr_1575 0.55 -0.2 1,771,040 + Psyr_1575 0.55 -0.0 1,771,041 - Psyr_1575 0.56 +0.5 1,771,041 - Psyr_1575 0.56 -0.1 1,771,041 - Psyr_1575 0.56 -1.1 1,771,041 - Psyr_1575 0.56 -0.7 1,771,041 - Psyr_1575 0.56 +0.8 1,771,041 - Psyr_1575 0.56 -0.5 1,771,041 - Psyr_1575 0.56 -0.6 1,771,041 - Psyr_1575 0.56 -0.5 1,771,041 - Psyr_1575 0.56 +0.2 1,771,041 - Psyr_1575 0.56 +0.1 1,771,041 - Psyr_1575 0.56 +1.0 1,771,041 - Psyr_1575 0.56 -0.0 1,771,041 - Psyr_1575 0.56 +1.0 1,771,041 - Psyr_1575 0.56 +0.2 1,771,041 - Psyr_1575 0.56 +0.7 1,771,041 - Psyr_1575 0.56 -0.8 1,771,041 - Psyr_1575 0.56 -1.8 1,771,041 - Psyr_1575 0.56 -0.3 1,771,041 - Psyr_1575 0.56 -0.3 1,771,041 - Psyr_1575 0.56 -0.5 1,771,041 - Psyr_1575 0.56 +0.8 1,771,041 - Psyr_1575 0.56 +2.2 1,771,041 - Psyr_1575 0.56 -1.3 1,771,045 + Psyr_1575 0.56 +0.1 1,771,045 + Psyr_1575 0.56 -0.3 1,771,045 + Psyr_1575 0.56 +0.4 1,771,045 + Psyr_1575 0.56 -1.0 1,771,045 + Psyr_1575 0.56 +1.3 1,771,045 + Psyr_1575 0.56 -0.6 1,771,045 + Psyr_1575 0.56 -0.4 1,771,045 + Psyr_1575 0.56 +1.0 1,771,045 + Psyr_1575 0.56 +0.4 1,771,046 - Psyr_1575 0.57 +1.0 1,771,046 - Psyr_1575 0.57 +0.7 1,771,046 - Psyr_1575 0.57 +0.2 1,771,046 - Psyr_1575 0.57 -0.6 1,771,046 - Psyr_1575 0.57 +0.1 1,771,046 - Psyr_1575 0.57 +0.2 1,771,046 - Psyr_1575 0.57 +1.4 1,771,187 + Psyr_1575 0.86 -0.8 1,771,251 - +0.3 1,771,339 + -1.0 1,771,449 + Psyr_1576 0.15 +1.0 1,771,450 - Psyr_1576 0.15 +0.4 1,771,450 - Psyr_1576 0.15 -0.4 1,771,559 + Psyr_1576 0.29 +1.0 1,771,632 - Psyr_1576 0.38 -0.4 1,771,827 - Psyr_1576 0.62 -0.1 1,771,827 - Psyr_1576 0.62 -0.7 1,771,883 + Psyr_1576 0.69 -2.1 1,772,130 + -0.2 1,772,131 - +2.0 1,772,131 - +0.3 1,772,149 - -0.0 1,772,188 + +1.2 1,772,257 + Psyr_1577 0.15 +0.2 1,772,258 - Psyr_1577 0.16 +1.0 1,772,312 - Psyr_1577 0.26 +0.4 1,772,314 - Psyr_1577 0.26 +0.6 1,772,368 + Psyr_1577 0.37 +0.2 1,772,369 - Psyr_1577 0.37 +0.6 1,772,547 + Psyr_1577 0.71 -0.5 1,772,547 + Psyr_1577 0.71 -0.6 1,772,547 + Psyr_1577 0.71 +2.0 1,772,547 + Psyr_1577 0.71 +0.1 1,772,547 + Psyr_1577 0.71 +0.4 1,772,547 + Psyr_1577 0.71 +1.2 1,772,547 + Psyr_1577 0.71 -1.0 1,772,547 + Psyr_1577 0.71 -1.6 1,772,547 + Psyr_1577 0.71 +1.1 1,772,548 - Psyr_1577 0.71 +1.6 1,772,548 - Psyr_1577 0.71 +1.2 1,772,548 - Psyr_1577 0.71 -0.7 1,772,548 - Psyr_1577 0.71 +0.8 1,772,739 + -1.0 1,772,739 + +0.7 1,772,739 + -0.6 1,772,739 + -0.8 1,772,739 + -0.6 1,772,739 + -0.5 1,772,739 + -0.5 1,772,739 + +0.3 1,772,739 + +0.5 1,772,740 - -0.0 1,772,740 - +1.6 1,772,740 - -2.2 1,772,740 - +0.3 1,772,740 - +0.3 1,772,740 - -1.8 1,772,740 - -0.4 1,772,740 - -0.5 1,772,740 - -1.8 1,772,740 - -0.2 1,772,741 + +1.1 1,772,741 + +1.0 1,772,741 + -0.0 1,772,741 + +0.1 1,772,741 + -2.4 1,772,741 + +0.3 1,772,741 + +0.4 1,772,742 - +1.3 1,772,742 - +0.1 1,772,742 - +0.4 1,772,742 - -0.4 1,772,742 - -1.8 1,772,761 + +0.4 1,772,761 + +1.0 1,772,761 + -1.4 1,772,762 - +0.9 1,772,762 - +0.2 1,772,762 - -0.4 1,772,765 + -0.0 1,772,765 + -0.0 1,772,765 + +0.2 1,772,765 + -0.3 1,772,765 + -2.5 1,772,766 - +0.4 1,772,766 - +1.0 1,772,766 - -2.0 1,772,766 - -1.0 1,772,769 + +1.4 1,772,888 + Psyr_1578 0.21 -2.8 1,772,888 + Psyr_1578 0.21 +1.4 1,772,888 + Psyr_1578 0.21 -0.7 1,772,889 - Psyr_1578 0.21 -0.0 1,772,889 - Psyr_1578 0.21 -1.2 1,772,949 + Psyr_1578 0.29 +0.3 1,772,949 + Psyr_1578 0.29 -0.3 1,772,949 + Psyr_1578 0.29 +3.8 1,772,950 - Psyr_1578 0.30 -0.1 1,772,975 + Psyr_1578 0.33 +0.2 1,772,976 - Psyr_1578 0.33 -0.5 1,772,976 - Psyr_1578 0.33 -1.2 1,773,062 + Psyr_1578 0.45 -3.1 1,773,063 - Psyr_1578 0.45 +1.3 1,773,063 - Psyr_1578 0.45 -0.1 1,773,063 - Psyr_1578 0.45 -0.5 1,773,063 - Psyr_1578 0.45 +0.3 1,773,066 + Psyr_1578 0.46 -2.2
Or see this region's nucleotide sequence