Experiment: KB with Hydrastine (1R, 9S) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1276 and Psyr_1277 are separated by 103 nucleotides
Psyr_1276: Psyr_1276 - conserved hypothetical protein, at 1,441,772 to 1,442,239
_1276
Psyr_1277: Psyr_1277 - formate-dependent phosphoribosylglycinamide formyltransferase, at 1,442,343 to 1,443,524
_1277
Position (kb)
1441
1442
1443 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1440.841 kb on + strand at 1440.864 kb on + strand at 1441.170 kb on + strand at 1441.193 kb on + strand at 1441.735 kb on + strand at 1441.790 kb on + strand at 1441.790 kb on + strand at 1441.790 kb on + strand at 1441.955 kb on + strand, within Psyr_1276 at 1441.955 kb on + strand, within Psyr_1276 at 1441.955 kb on + strand, within Psyr_1276 at 1441.955 kb on + strand, within Psyr_1276 at 1441.955 kb on + strand, within Psyr_1276 at 1441.955 kb on + strand, within Psyr_1276 at 1441.956 kb on - strand, within Psyr_1276 at 1441.956 kb on - strand, within Psyr_1276 at 1441.956 kb on - strand, within Psyr_1276 at 1441.956 kb on - strand, within Psyr_1276 at 1441.956 kb on - strand at 1441.956 kb on - strand, within Psyr_1276 at 1441.956 kb on - strand, within Psyr_1276 at 1441.956 kb on - strand, within Psyr_1276 at 1441.956 kb on - strand, within Psyr_1276 at 1441.956 kb on - strand, within Psyr_1276 at 1442.102 kb on - strand, within Psyr_1276 at 1442.108 kb on - strand, within Psyr_1276 at 1442.108 kb on - strand, within Psyr_1276 at 1442.108 kb on - strand, within Psyr_1276 at 1442.108 kb on - strand, within Psyr_1276 at 1442.108 kb on - strand, within Psyr_1276 at 1442.108 kb on - strand, within Psyr_1276 at 1442.302 kb on - strand at 1442.386 kb on + strand at 1442.387 kb on - strand at 1442.764 kb on - strand, within Psyr_1277 at 1443.030 kb on + strand, within Psyr_1277 at 1443.031 kb on - strand, within Psyr_1277
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Hydrastine (1R, 9S) 10 mM remove 1,440,841 + -0.4 1,440,864 + -0.2 1,441,170 + -0.6 1,441,193 + -0.7 1,441,735 + -1.4 1,441,790 + -1.3 1,441,790 + -0.4 1,441,790 + +0.2 1,441,955 + Psyr_1276 0.39 -0.4 1,441,955 + Psyr_1276 0.39 -0.2 1,441,955 + Psyr_1276 0.39 +0.3 1,441,955 + Psyr_1276 0.39 +1.5 1,441,955 + Psyr_1276 0.39 -2.0 1,441,955 + Psyr_1276 0.39 +0.4 1,441,956 - Psyr_1276 0.39 -0.2 1,441,956 - Psyr_1276 0.39 -0.4 1,441,956 - Psyr_1276 0.39 -1.2 1,441,956 - Psyr_1276 0.39 -2.8 1,441,956 - -1.6 1,441,956 - Psyr_1276 0.39 -0.5 1,441,956 - Psyr_1276 0.39 -0.1 1,441,956 - Psyr_1276 0.39 -2.1 1,441,956 - Psyr_1276 0.39 +0.2 1,441,956 - Psyr_1276 0.39 -0.9 1,442,102 - Psyr_1276 0.71 -1.4 1,442,108 - Psyr_1276 0.72 -3.8 1,442,108 - Psyr_1276 0.72 -0.6 1,442,108 - Psyr_1276 0.72 +0.4 1,442,108 - Psyr_1276 0.72 -0.1 1,442,108 - Psyr_1276 0.72 -1.1 1,442,108 - Psyr_1276 0.72 -2.2 1,442,302 - +0.4 1,442,386 + -0.2 1,442,387 - +0.2 1,442,764 - Psyr_1277 0.36 +0.4 1,443,030 + Psyr_1277 0.58 +0.9 1,443,031 - Psyr_1277 0.58 +0.1
Or see this region's nucleotide sequence