Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1276

Experiment: KB with Hydrastine (1R, 9S) 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1276 and Psyr_1277 are separated by 103 nucleotides Psyr_1276: Psyr_1276 - conserved hypothetical protein, at 1,441,772 to 1,442,239 _1276 Psyr_1277: Psyr_1277 - formate-dependent phosphoribosylglycinamide formyltransferase, at 1,442,343 to 1,443,524 _1277 Position (kb) 1441 1442 1443Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1440.841 kb on + strandat 1440.864 kb on + strandat 1441.170 kb on + strandat 1441.193 kb on + strandat 1441.735 kb on + strandat 1441.790 kb on + strandat 1441.790 kb on + strandat 1441.790 kb on + strandat 1441.955 kb on + strand, within Psyr_1276at 1441.955 kb on + strand, within Psyr_1276at 1441.955 kb on + strand, within Psyr_1276at 1441.955 kb on + strand, within Psyr_1276at 1441.955 kb on + strand, within Psyr_1276at 1441.955 kb on + strand, within Psyr_1276at 1441.956 kb on - strand, within Psyr_1276at 1441.956 kb on - strand, within Psyr_1276at 1441.956 kb on - strand, within Psyr_1276at 1441.956 kb on - strand, within Psyr_1276at 1441.956 kb on - strandat 1441.956 kb on - strand, within Psyr_1276at 1441.956 kb on - strand, within Psyr_1276at 1441.956 kb on - strand, within Psyr_1276at 1441.956 kb on - strand, within Psyr_1276at 1441.956 kb on - strand, within Psyr_1276at 1442.102 kb on - strand, within Psyr_1276at 1442.108 kb on - strand, within Psyr_1276at 1442.108 kb on - strand, within Psyr_1276at 1442.108 kb on - strand, within Psyr_1276at 1442.108 kb on - strand, within Psyr_1276at 1442.108 kb on - strand, within Psyr_1276at 1442.108 kb on - strand, within Psyr_1276at 1442.302 kb on - strandat 1442.386 kb on + strandat 1442.387 kb on - strandat 1442.764 kb on - strand, within Psyr_1277at 1443.030 kb on + strand, within Psyr_1277at 1443.031 kb on - strand, within Psyr_1277

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Hydrastine (1R, 9S) 10 mM
remove
1,440,841 + -0.4
1,440,864 + -0.2
1,441,170 + -0.6
1,441,193 + -0.7
1,441,735 + -1.4
1,441,790 + -1.3
1,441,790 + -0.4
1,441,790 + +0.2
1,441,955 + Psyr_1276 0.39 -0.4
1,441,955 + Psyr_1276 0.39 -0.2
1,441,955 + Psyr_1276 0.39 +0.3
1,441,955 + Psyr_1276 0.39 +1.5
1,441,955 + Psyr_1276 0.39 -2.0
1,441,955 + Psyr_1276 0.39 +0.4
1,441,956 - Psyr_1276 0.39 -0.2
1,441,956 - Psyr_1276 0.39 -0.4
1,441,956 - Psyr_1276 0.39 -1.2
1,441,956 - Psyr_1276 0.39 -2.8
1,441,956 - -1.6
1,441,956 - Psyr_1276 0.39 -0.5
1,441,956 - Psyr_1276 0.39 -0.1
1,441,956 - Psyr_1276 0.39 -2.1
1,441,956 - Psyr_1276 0.39 +0.2
1,441,956 - Psyr_1276 0.39 -0.9
1,442,102 - Psyr_1276 0.71 -1.4
1,442,108 - Psyr_1276 0.72 -3.8
1,442,108 - Psyr_1276 0.72 -0.6
1,442,108 - Psyr_1276 0.72 +0.4
1,442,108 - Psyr_1276 0.72 -0.1
1,442,108 - Psyr_1276 0.72 -1.1
1,442,108 - Psyr_1276 0.72 -2.2
1,442,302 - +0.4
1,442,386 + -0.2
1,442,387 - +0.2
1,442,764 - Psyr_1277 0.36 +0.4
1,443,030 + Psyr_1277 0.58 +0.9
1,443,031 - Psyr_1277 0.58 +0.1

Or see this region's nucleotide sequence