Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0206

Experiment: KB with Hydrastine (1R, 9S) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0205 and Psyr_0206 are separated by 208 nucleotidesPsyr_0206 and Psyr_0207 are separated by 52 nucleotidesPsyr_0207 and Psyr_0208 are separated by 54 nucleotides Psyr_0205: Psyr_0205 - outer membrane transport energization protein ExbB, at 219,735 to 220,697 _0205 Psyr_0206: Psyr_0206 - conserved hypothetical protein, at 220,906 to 221,754 _0206 Psyr_0207: Psyr_0207 - lipoprotein, putative, at 221,807 to 222,544 _0207 Psyr_0208: Psyr_0208 - endoribonuclease L-PSP, at 222,599 to 222,979 _0208 Position (kb) 220 221 222Strain fitness (log2 ratio) -2 -1 0 1 2 3at 220.814 kb on - strandat 220.814 kb on - strandat 220.816 kb on + strandat 220.816 kb on + strandat 220.817 kb on - strandat 220.817 kb on - strandat 220.817 kb on - strandat 220.831 kb on - strandat 220.834 kb on + strandat 220.834 kb on + strandat 220.834 kb on + strandat 220.834 kb on + strandat 220.835 kb on - strandat 220.835 kb on - strandat 221.101 kb on + strand, within Psyr_0206at 221.101 kb on + strand, within Psyr_0206at 221.101 kb on + strand, within Psyr_0206at 221.101 kb on + strand, within Psyr_0206at 221.102 kb on - strand, within Psyr_0206at 221.102 kb on - strand, within Psyr_0206at 221.102 kb on - strand, within Psyr_0206at 221.102 kb on - strand, within Psyr_0206at 221.110 kb on + strand, within Psyr_0206at 221.110 kb on + strand, within Psyr_0206at 221.110 kb on + strand, within Psyr_0206at 221.110 kb on + strand, within Psyr_0206at 221.110 kb on + strand, within Psyr_0206at 221.110 kb on + strand, within Psyr_0206at 221.110 kb on + strand, within Psyr_0206at 221.111 kb on - strand, within Psyr_0206at 221.111 kb on - strand, within Psyr_0206at 221.111 kb on - strand, within Psyr_0206at 221.111 kb on - strand, within Psyr_0206at 221.111 kb on - strand, within Psyr_0206at 221.158 kb on + strand, within Psyr_0206at 221.158 kb on + strand, within Psyr_0206at 221.158 kb on + strand, within Psyr_0206at 221.158 kb on + strand, within Psyr_0206at 221.158 kb on + strand, within Psyr_0206at 221.159 kb on - strand, within Psyr_0206at 221.159 kb on - strand, within Psyr_0206at 221.159 kb on - strand, within Psyr_0206at 221.175 kb on + strand, within Psyr_0206at 221.176 kb on - strand, within Psyr_0206at 221.305 kb on + strand, within Psyr_0206at 221.305 kb on + strand, within Psyr_0206at 221.305 kb on + strand, within Psyr_0206at 221.306 kb on - strand, within Psyr_0206at 221.306 kb on - strand, within Psyr_0206at 221.306 kb on - strand, within Psyr_0206at 221.306 kb on - strand, within Psyr_0206at 221.306 kb on - strand, within Psyr_0206at 221.389 kb on + strand, within Psyr_0206at 221.472 kb on + strand, within Psyr_0206at 221.473 kb on - strand, within Psyr_0206at 221.552 kb on - strand, within Psyr_0206at 221.611 kb on + strand, within Psyr_0206at 221.611 kb on + strand, within Psyr_0206at 221.612 kb on - strand, within Psyr_0206at 221.612 kb on - strand, within Psyr_0206at 221.612 kb on - strand, within Psyr_0206at 221.714 kb on - strandat 221.735 kb on - strandat 221.753 kb on - strandat 221.779 kb on + strandat 221.891 kb on + strand, within Psyr_0207at 221.892 kb on - strand, within Psyr_0207at 221.892 kb on - strand, within Psyr_0207at 221.967 kb on + strand, within Psyr_0207at 221.968 kb on - strand, within Psyr_0207at 222.089 kb on + strand, within Psyr_0207at 222.114 kb on + strand, within Psyr_0207at 222.114 kb on + strand, within Psyr_0207at 222.115 kb on - strand, within Psyr_0207at 222.342 kb on + strand, within Psyr_0207at 222.342 kb on + strand, within Psyr_0207at 222.342 kb on + strand, within Psyr_0207at 222.343 kb on - strand, within Psyr_0207at 222.343 kb on - strand, within Psyr_0207at 222.600 kb on + strandat 222.696 kb on + strand, within Psyr_0208at 222.696 kb on + strand, within Psyr_0208at 222.697 kb on - strand, within Psyr_0208at 222.697 kb on - strand, within Psyr_0208at 222.697 kb on - strand, within Psyr_0208at 222.697 kb on - strand, within Psyr_0208at 222.697 kb on - strand, within Psyr_0208at 222.697 kb on - strand, within Psyr_0208

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Hydrastine (1R, 9S) 10 mM
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220,814 - +0.1
220,814 - +0.1
220,816 + -2.1
220,816 + -0.8
220,817 - -0.8
220,817 - -0.1
220,817 - -0.6
220,831 - -1.4
220,834 + -0.6
220,834 + +0.6
220,834 + -0.6
220,834 + +0.5
220,835 - -1.1
220,835 - +0.8
221,101 + Psyr_0206 0.23 +0.3
221,101 + Psyr_0206 0.23 +0.5
221,101 + Psyr_0206 0.23 +0.1
221,101 + Psyr_0206 0.23 +1.8
221,102 - Psyr_0206 0.23 +0.8
221,102 - Psyr_0206 0.23 +0.8
221,102 - Psyr_0206 0.23 -2.0
221,102 - Psyr_0206 0.23 -0.8
221,110 + Psyr_0206 0.24 -0.1
221,110 + Psyr_0206 0.24 +0.1
221,110 + Psyr_0206 0.24 +0.7
221,110 + Psyr_0206 0.24 +0.3
221,110 + Psyr_0206 0.24 +0.9
221,110 + Psyr_0206 0.24 +1.3
221,110 + Psyr_0206 0.24 -0.0
221,111 - Psyr_0206 0.24 +0.5
221,111 - Psyr_0206 0.24 +0.1
221,111 - Psyr_0206 0.24 +1.2
221,111 - Psyr_0206 0.24 +1.2
221,111 - Psyr_0206 0.24 -0.4
221,158 + Psyr_0206 0.30 +0.5
221,158 + Psyr_0206 0.30 +0.1
221,158 + Psyr_0206 0.30 -0.1
221,158 + Psyr_0206 0.30 +1.5
221,158 + Psyr_0206 0.30 -0.6
221,159 - Psyr_0206 0.30 -1.4
221,159 - Psyr_0206 0.30 -1.0
221,159 - Psyr_0206 0.30 +0.4
221,175 + Psyr_0206 0.32 -0.1
221,176 - Psyr_0206 0.32 -0.1
221,305 + Psyr_0206 0.47 +2.1
221,305 + Psyr_0206 0.47 +3.2
221,305 + Psyr_0206 0.47 -0.3
221,306 - Psyr_0206 0.47 +1.7
221,306 - Psyr_0206 0.47 +0.4
221,306 - Psyr_0206 0.47 -1.0
221,306 - Psyr_0206 0.47 -0.7
221,306 - Psyr_0206 0.47 +0.7
221,389 + Psyr_0206 0.57 -1.8
221,472 + Psyr_0206 0.67 -1.1
221,473 - Psyr_0206 0.67 -1.0
221,552 - Psyr_0206 0.76 +0.7
221,611 + Psyr_0206 0.83 +0.3
221,611 + Psyr_0206 0.83 -0.5
221,612 - Psyr_0206 0.83 -2.5
221,612 - Psyr_0206 0.83 +0.3
221,612 - Psyr_0206 0.83 +0.9
221,714 - -1.4
221,735 - +0.1
221,753 - +0.1
221,779 + -1.6
221,891 + Psyr_0207 0.11 +0.4
221,892 - Psyr_0207 0.12 -0.5
221,892 - Psyr_0207 0.12 +0.0
221,967 + Psyr_0207 0.22 +0.6
221,968 - Psyr_0207 0.22 -0.4
222,089 + Psyr_0207 0.38 +0.7
222,114 + Psyr_0207 0.42 +0.2
222,114 + Psyr_0207 0.42 -0.4
222,115 - Psyr_0207 0.42 +2.8
222,342 + Psyr_0207 0.72 +1.8
222,342 + Psyr_0207 0.72 -1.8
222,342 + Psyr_0207 0.72 -0.1
222,343 - Psyr_0207 0.73 -0.3
222,343 - Psyr_0207 0.73 -1.5
222,600 + -0.0
222,696 + Psyr_0208 0.25 +0.4
222,696 + Psyr_0208 0.25 -0.4
222,697 - Psyr_0208 0.26 -0.8
222,697 - Psyr_0208 0.26 -0.4
222,697 - Psyr_0208 0.26 +1.2
222,697 - Psyr_0208 0.26 -0.3
222,697 - Psyr_0208 0.26 +0.8
222,697 - Psyr_0208 0.26 -0.8

Or see this region's nucleotide sequence