Experiment: DinoMM minimal media with L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_859 and HP15_860 are separated by 157 nucleotides HP15_860 and HP15_861 are separated by 68 nucleotides HP15_861 and HP15_862 are separated by 178 nucleotides
HP15_859: HP15_859 - phenylpyruvate ferredoxin oxidoreductase (EC 1.2.7.8) <small>(from data)</small>, at 876,360 to 879,878
_859
HP15_860: HP15_860 - transcriptional regulator, AsnC family protein, at 880,036 to 880,515
_860
HP15_861: HP15_861 - cold shock, CspA, at 880,584 to 880,814
_861
HP15_862: HP15_862 - signal transduction protein containing a membrane domain, an EAL and a GGDEF domain, at 880,993 to 884,754
_862
Position (kb) 880
881 Strain fitness (log2 ratio) -2
-1
0
1
2 at 879.060 kb on + strand, within HP15_859 at 879.355 kb on - strand, within HP15_859 at 879.482 kb on + strand, within HP15_859 at 879.700 kb on + strand at 879.703 kb on - strand at 879.712 kb on + strand at 879.720 kb on - strand at 879.732 kb on + strand at 879.750 kb on + strand at 879.750 kb on + strand at 879.842 kb on - strand at 880.172 kb on - strand, within HP15_860 at 880.177 kb on - strand, within HP15_860 at 880.177 kb on - strand, within HP15_860 at 880.202 kb on + strand, within HP15_860 at 880.208 kb on - strand, within HP15_860 at 880.300 kb on - strand, within HP15_860 at 880.334 kb on + strand, within HP15_860 at 880.335 kb on - strand, within HP15_860 at 880.370 kb on + strand, within HP15_860 at 880.370 kb on + strand, within HP15_860 at 880.370 kb on + strand, within HP15_860 at 880.378 kb on - strand, within HP15_860 at 880.378 kb on - strand, within HP15_860 at 880.378 kb on - strand, within HP15_860 at 880.394 kb on + strand, within HP15_860 at 880.620 kb on - strand, within HP15_861 at 880.848 kb on + strand at 880.909 kb on - strand at 880.961 kb on + strand at 880.972 kb on - strand at 881.033 kb on + strand at 881.043 kb on + strand at 881.089 kb on + strand at 881.100 kb on + strand at 881.108 kb on - strand at 881.108 kb on - strand at 881.134 kb on - strand at 881.154 kb on - strand at 881.386 kb on + strand, within HP15_862 at 881.394 kb on - strand, within HP15_862 at 881.397 kb on + strand, within HP15_862
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Histidine remove 879,060 + HP15_859 0.77 -0.8 879,355 - HP15_859 0.85 +2.2 879,482 + HP15_859 0.89 -1.1 879,700 + -0.9 879,703 - +1.4 879,712 + -1.1 879,720 - -0.1 879,732 + +0.5 879,750 + +0.8 879,750 + -0.7 879,842 - -0.7 880,172 - HP15_860 0.28 +0.0 880,177 - HP15_860 0.29 -0.3 880,177 - HP15_860 0.29 +1.9 880,202 + HP15_860 0.35 +0.2 880,208 - HP15_860 0.36 -2.1 880,300 - HP15_860 0.55 -1.2 880,334 + HP15_860 0.62 -0.5 880,335 - HP15_860 0.62 -0.3 880,370 + HP15_860 0.70 +1.1 880,370 + HP15_860 0.70 -0.5 880,370 + HP15_860 0.70 -0.6 880,378 - HP15_860 0.71 -0.7 880,378 - HP15_860 0.71 -0.6 880,378 - HP15_860 0.71 +0.4 880,394 + HP15_860 0.75 -1.0 880,620 - HP15_861 0.16 +1.0 880,848 + +0.7 880,909 - -0.3 880,961 + +0.7 880,972 - +0.0 881,033 + +0.3 881,043 + -0.4 881,089 + +0.4 881,100 + +0.6 881,108 - +1.5 881,108 - +0.7 881,134 - -0.9 881,154 - +0.5 881,386 + HP15_862 0.10 +0.0 881,394 - HP15_862 0.11 +0.6 881,397 + HP15_862 0.11 -0.5
Or see this region's nucleotide sequence