Experiment: DinoMM minimal media with L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g148 and HP15_p187g149 are separated by 12 nucleotides HP15_p187g149 and HP15_p187g150 are separated by 169 nucleotides HP15_p187g150 and HP15_p187g151 are separated by 443 nucleotides
HP15_p187g148: HP15_p187g148 - cytochrome P450 family protein, at 148,508 to 149,896
_p187g148
HP15_p187g149: HP15_p187g149 - 2Fe-2S ferredoxin, at 149,909 to 150,229
_p187g149
HP15_p187g150: HP15_p187g150 - transcriptional regulator, AraC family protein, at 150,399 to 151,430
_p187g150
HP15_p187g151: HP15_p187g151 - conserved hypothetical protein, at 151,874 to 153,103
_p187g151
Position (kb) 150
151
152 Strain fitness (log2 ratio) -2
-1
0
1
2 at 149.406 kb on + strand, within HP15_p187g148 at 149.407 kb on - strand, within HP15_p187g148 at 149.407 kb on - strand, within HP15_p187g148 at 149.415 kb on + strand, within HP15_p187g148 at 149.425 kb on - strand, within HP15_p187g148 at 149.436 kb on + strand, within HP15_p187g148 at 149.449 kb on - strand, within HP15_p187g148 at 149.449 kb on - strand, within HP15_p187g148 at 149.449 kb on - strand, within HP15_p187g148 at 149.449 kb on - strand, within HP15_p187g148 at 149.451 kb on + strand, within HP15_p187g148 at 149.451 kb on + strand, within HP15_p187g148 at 149.451 kb on + strand, within HP15_p187g148 at 149.451 kb on + strand, within HP15_p187g148 at 149.459 kb on - strand, within HP15_p187g148 at 149.459 kb on - strand, within HP15_p187g148 at 149.471 kb on - strand, within HP15_p187g148 at 149.591 kb on + strand, within HP15_p187g148 at 149.627 kb on + strand, within HP15_p187g148 at 149.632 kb on + strand, within HP15_p187g148 at 149.725 kb on - strand, within HP15_p187g148 at 149.791 kb on + strand at 149.796 kb on + strand at 149.801 kb on + strand at 149.804 kb on - strand at 149.821 kb on + strand at 149.851 kb on + strand at 149.863 kb on + strand at 149.890 kb on - strand at 149.935 kb on + strand at 149.943 kb on - strand, within HP15_p187g149 at 149.943 kb on - strand, within HP15_p187g149 at 149.943 kb on - strand, within HP15_p187g149 at 149.943 kb on - strand, within HP15_p187g149 at 149.943 kb on - strand, within HP15_p187g149 at 149.948 kb on - strand, within HP15_p187g149 at 149.952 kb on + strand, within HP15_p187g149 at 149.980 kb on + strand, within HP15_p187g149 at 150.017 kb on + strand, within HP15_p187g149 at 150.041 kb on - strand, within HP15_p187g149 at 150.195 kb on + strand, within HP15_p187g149 at 150.201 kb on - strand at 150.250 kb on - strand at 150.260 kb on - strand at 150.440 kb on - strand at 150.440 kb on - strand at 150.440 kb on - strand at 150.440 kb on - strand at 150.442 kb on + strand at 150.442 kb on + strand at 150.445 kb on + strand at 150.450 kb on - strand at 150.450 kb on - strand at 150.450 kb on - strand at 150.450 kb on - strand at 150.450 kb on - strand at 150.522 kb on + strand, within HP15_p187g150 at 150.548 kb on - strand, within HP15_p187g150 at 150.660 kb on + strand, within HP15_p187g150 at 150.661 kb on + strand, within HP15_p187g150 at 150.668 kb on - strand, within HP15_p187g150 at 150.673 kb on - strand, within HP15_p187g150 at 150.673 kb on - strand, within HP15_p187g150 at 150.673 kb on - strand, within HP15_p187g150 at 150.751 kb on + strand, within HP15_p187g150 at 150.845 kb on - strand, within HP15_p187g150 at 150.850 kb on - strand, within HP15_p187g150 at 150.881 kb on - strand, within HP15_p187g150 at 150.881 kb on - strand, within HP15_p187g150 at 150.892 kb on - strand, within HP15_p187g150 at 150.895 kb on + strand, within HP15_p187g150 at 150.916 kb on - strand, within HP15_p187g150 at 150.927 kb on + strand, within HP15_p187g150 at 151.055 kb on - strand, within HP15_p187g150 at 151.060 kb on + strand, within HP15_p187g150 at 151.156 kb on - strand, within HP15_p187g150 at 151.175 kb on + strand, within HP15_p187g150 at 151.178 kb on - strand, within HP15_p187g150 at 151.183 kb on - strand, within HP15_p187g150 at 151.183 kb on - strand, within HP15_p187g150 at 151.196 kb on + strand, within HP15_p187g150 at 151.196 kb on + strand, within HP15_p187g150 at 151.208 kb on + strand, within HP15_p187g150 at 151.221 kb on - strand, within HP15_p187g150 at 151.248 kb on - strand, within HP15_p187g150 at 151.396 kb on + strand at 151.398 kb on - strand at 151.401 kb on + strand at 151.480 kb on + strand at 151.544 kb on + strand at 151.577 kb on + strand at 151.589 kb on + strand at 151.598 kb on - strand at 151.607 kb on + strand at 151.633 kb on + strand at 151.633 kb on + strand at 151.633 kb on + strand at 151.641 kb on - strand at 151.641 kb on - strand at 151.641 kb on - strand at 151.641 kb on - strand at 151.712 kb on + strand at 151.742 kb on + strand at 151.750 kb on - strand at 151.782 kb on - strand at 151.813 kb on - strand at 151.885 kb on - strand at 152.072 kb on + strand, within HP15_p187g151 at 152.072 kb on + strand, within HP15_p187g151 at 152.077 kb on + strand, within HP15_p187g151 at 152.077 kb on + strand, within HP15_p187g151 at 152.077 kb on + strand, within HP15_p187g151 at 152.080 kb on - strand, within HP15_p187g151 at 152.085 kb on - strand, within HP15_p187g151 at 152.103 kb on - strand, within HP15_p187g151 at 152.187 kb on + strand, within HP15_p187g151 at 152.187 kb on + strand, within HP15_p187g151 at 152.187 kb on + strand, within HP15_p187g151 at 152.187 kb on + strand, within HP15_p187g151 at 152.187 kb on + strand, within HP15_p187g151 at 152.187 kb on + strand, within HP15_p187g151 at 152.194 kb on - strand, within HP15_p187g151 at 152.194 kb on - strand, within HP15_p187g151 at 152.195 kb on - strand, within HP15_p187g151 at 152.201 kb on - strand, within HP15_p187g151 at 152.239 kb on - strand, within HP15_p187g151 at 152.252 kb on + strand, within HP15_p187g151 at 152.252 kb on + strand, within HP15_p187g151 at 152.252 kb on + strand, within HP15_p187g151 at 152.260 kb on - strand, within HP15_p187g151 at 152.260 kb on - strand, within HP15_p187g151 at 152.260 kb on - strand, within HP15_p187g151 at 152.260 kb on - strand, within HP15_p187g151 at 152.270 kb on - strand, within HP15_p187g151 at 152.278 kb on - strand, within HP15_p187g151 at 152.278 kb on - strand, within HP15_p187g151 at 152.286 kb on - strand, within HP15_p187g151 at 152.313 kb on + strand, within HP15_p187g151 at 152.317 kb on + strand, within HP15_p187g151 at 152.358 kb on + strand, within HP15_p187g151 at 152.374 kb on + strand, within HP15_p187g151 at 152.382 kb on + strand, within HP15_p187g151 at 152.390 kb on - strand, within HP15_p187g151 at 152.406 kb on + strand, within HP15_p187g151 at 152.424 kb on - strand, within HP15_p187g151
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Histidine remove 149,406 + HP15_p187g148 0.65 +0.4 149,407 - HP15_p187g148 0.65 -0.9 149,407 - HP15_p187g148 0.65 -0.4 149,415 + HP15_p187g148 0.65 -0.8 149,425 - HP15_p187g148 0.66 -1.3 149,436 + HP15_p187g148 0.67 +0.2 149,449 - HP15_p187g148 0.68 -0.1 149,449 - HP15_p187g148 0.68 -1.6 149,449 - HP15_p187g148 0.68 -0.9 149,449 - HP15_p187g148 0.68 +1.0 149,451 + HP15_p187g148 0.68 -1.3 149,451 + HP15_p187g148 0.68 -0.2 149,451 + HP15_p187g148 0.68 +0.2 149,451 + HP15_p187g148 0.68 -0.9 149,459 - HP15_p187g148 0.68 +0.3 149,459 - HP15_p187g148 0.68 -0.1 149,471 - HP15_p187g148 0.69 +0.3 149,591 + HP15_p187g148 0.78 -0.9 149,627 + HP15_p187g148 0.81 +0.5 149,632 + HP15_p187g148 0.81 -0.4 149,725 - HP15_p187g148 0.88 +1.1 149,791 + +0.1 149,796 + -1.2 149,801 + -0.1 149,804 - +0.7 149,821 + -1.7 149,851 + -1.2 149,863 + -0.3 149,890 - +0.7 149,935 + -1.3 149,943 - HP15_p187g149 0.11 +0.9 149,943 - HP15_p187g149 0.11 +1.5 149,943 - HP15_p187g149 0.11 +0.4 149,943 - HP15_p187g149 0.11 +1.7 149,943 - HP15_p187g149 0.11 +0.1 149,948 - HP15_p187g149 0.12 -0.2 149,952 + HP15_p187g149 0.13 -0.6 149,980 + HP15_p187g149 0.22 +0.7 150,017 + HP15_p187g149 0.34 +0.1 150,041 - HP15_p187g149 0.41 -2.0 150,195 + HP15_p187g149 0.89 +1.2 150,201 - -0.2 150,250 - -0.5 150,260 - -0.1 150,440 - +0.4 150,440 - +0.7 150,440 - -0.2 150,440 - -0.1 150,442 + -0.5 150,442 + +0.2 150,445 + +0.4 150,450 - +1.1 150,450 - -0.7 150,450 - +0.9 150,450 - -0.3 150,450 - +0.1 150,522 + HP15_p187g150 0.12 -0.6 150,548 - HP15_p187g150 0.14 -1.4 150,660 + HP15_p187g150 0.25 -0.4 150,661 + HP15_p187g150 0.25 +0.7 150,668 - HP15_p187g150 0.26 +0.4 150,673 - HP15_p187g150 0.27 +0.9 150,673 - HP15_p187g150 0.27 +0.8 150,673 - HP15_p187g150 0.27 -0.8 150,751 + HP15_p187g150 0.34 +0.3 150,845 - HP15_p187g150 0.43 -0.1 150,850 - HP15_p187g150 0.44 -0.8 150,881 - HP15_p187g150 0.47 -0.2 150,881 - HP15_p187g150 0.47 +0.1 150,892 - HP15_p187g150 0.48 -1.6 150,895 + HP15_p187g150 0.48 -1.2 150,916 - HP15_p187g150 0.50 +0.2 150,927 + HP15_p187g150 0.51 +0.9 151,055 - HP15_p187g150 0.64 +0.7 151,060 + HP15_p187g150 0.64 +0.1 151,156 - HP15_p187g150 0.73 -1.0 151,175 + HP15_p187g150 0.75 +0.1 151,178 - HP15_p187g150 0.75 -0.3 151,183 - HP15_p187g150 0.76 -1.3 151,183 - HP15_p187g150 0.76 -0.4 151,196 + HP15_p187g150 0.77 -0.8 151,196 + HP15_p187g150 0.77 -1.3 151,208 + HP15_p187g150 0.78 -1.1 151,221 - HP15_p187g150 0.80 -0.3 151,248 - HP15_p187g150 0.82 -0.6 151,396 + -0.6 151,398 - +0.6 151,401 + +1.0 151,480 + -0.6 151,544 + +0.7 151,577 + -0.6 151,589 + +0.5 151,598 - +0.9 151,607 + -0.4 151,633 + -0.0 151,633 + +1.0 151,633 + +0.4 151,641 - -1.1 151,641 - -0.2 151,641 - -1.4 151,641 - +0.6 151,712 + -0.1 151,742 + +0.8 151,750 - -1.2 151,782 - +1.1 151,813 - +0.7 151,885 - -1.1 152,072 + HP15_p187g151 0.16 +0.7 152,072 + HP15_p187g151 0.16 -0.7 152,077 + HP15_p187g151 0.17 -0.5 152,077 + HP15_p187g151 0.17 +1.2 152,077 + HP15_p187g151 0.17 -0.8 152,080 - HP15_p187g151 0.17 +0.1 152,085 - HP15_p187g151 0.17 -0.2 152,103 - HP15_p187g151 0.19 +0.5 152,187 + HP15_p187g151 0.25 +0.3 152,187 + HP15_p187g151 0.25 +1.2 152,187 + HP15_p187g151 0.25 +0.8 152,187 + HP15_p187g151 0.25 -0.4 152,187 + HP15_p187g151 0.25 +1.7 152,187 + HP15_p187g151 0.25 -0.1 152,194 - HP15_p187g151 0.26 +0.1 152,194 - HP15_p187g151 0.26 +0.2 152,195 - HP15_p187g151 0.26 -0.8 152,201 - HP15_p187g151 0.27 +0.4 152,239 - HP15_p187g151 0.30 +0.4 152,252 + HP15_p187g151 0.31 +1.9 152,252 + HP15_p187g151 0.31 -1.7 152,252 + HP15_p187g151 0.31 +0.1 152,260 - HP15_p187g151 0.31 +2.2 152,260 - HP15_p187g151 0.31 +0.5 152,260 - HP15_p187g151 0.31 +0.4 152,260 - HP15_p187g151 0.31 -0.9 152,270 - HP15_p187g151 0.32 -1.0 152,278 - HP15_p187g151 0.33 -0.3 152,278 - HP15_p187g151 0.33 +0.7 152,286 - HP15_p187g151 0.33 +0.2 152,313 + HP15_p187g151 0.36 +0.3 152,317 + HP15_p187g151 0.36 -0.7 152,358 + HP15_p187g151 0.39 +0.9 152,374 + HP15_p187g151 0.41 -0.6 152,382 + HP15_p187g151 0.41 +0.5 152,390 - HP15_p187g151 0.42 +0.7 152,406 + HP15_p187g151 0.43 +0.6 152,424 - HP15_p187g151 0.45 -0.6
Or see this region's nucleotide sequence