Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g67

Experiment: DinoMM minimal media with L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p187g66 and HP15_p187g67 overlap by 19 nucleotidesHP15_p187g67 and HP15_p187g68 are separated by 56 nucleotides HP15_p187g66: HP15_p187g66 - UDP-glucose 4-epimerase, at 58,756 to 59,787 _p187g66 HP15_p187g67: HP15_p187g67 - glycosyl transferase group 1 family protein, at 59,769 to 60,950 _p187g67 HP15_p187g68: HP15_p187g68 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 61,007 to 62,269 _p187g68 Position (kb) 59 60 61Strain fitness (log2 ratio) -2 -1 0 1 2 3at 58.813 kb on + strandat 58.853 kb on + strandat 58.888 kb on - strand, within HP15_p187g66at 58.924 kb on + strand, within HP15_p187g66at 58.945 kb on + strand, within HP15_p187g66at 58.960 kb on - strand, within HP15_p187g66at 58.961 kb on + strand, within HP15_p187g66at 58.961 kb on + strand, within HP15_p187g66at 58.969 kb on - strand, within HP15_p187g66at 58.980 kb on + strand, within HP15_p187g66at 58.983 kb on + strand, within HP15_p187g66at 58.986 kb on + strand, within HP15_p187g66at 58.986 kb on + strand, within HP15_p187g66at 58.993 kb on - strand, within HP15_p187g66at 59.021 kb on + strand, within HP15_p187g66at 59.036 kb on - strand, within HP15_p187g66at 59.038 kb on + strand, within HP15_p187g66at 59.038 kb on + strand, within HP15_p187g66at 59.046 kb on - strand, within HP15_p187g66at 59.046 kb on - strand, within HP15_p187g66at 59.051 kb on - strand, within HP15_p187g66at 59.063 kb on - strand, within HP15_p187g66at 59.073 kb on - strand, within HP15_p187g66at 59.073 kb on - strand, within HP15_p187g66at 59.087 kb on + strand, within HP15_p187g66at 59.129 kb on - strand, within HP15_p187g66at 59.172 kb on + strand, within HP15_p187g66at 59.181 kb on - strand, within HP15_p187g66at 59.188 kb on + strand, within HP15_p187g66at 59.190 kb on + strand, within HP15_p187g66at 59.195 kb on + strand, within HP15_p187g66at 59.195 kb on + strand, within HP15_p187g66at 59.212 kb on + strand, within HP15_p187g66at 59.212 kb on + strand, within HP15_p187g66at 59.310 kb on - strand, within HP15_p187g66at 59.338 kb on - strand, within HP15_p187g66at 59.395 kb on - strand, within HP15_p187g66at 59.414 kb on + strand, within HP15_p187g66at 59.414 kb on + strand, within HP15_p187g66at 59.422 kb on - strand, within HP15_p187g66at 59.429 kb on - strand, within HP15_p187g66at 59.437 kb on - strand, within HP15_p187g66at 59.506 kb on - strand, within HP15_p187g66at 59.538 kb on + strand, within HP15_p187g66at 59.553 kb on - strand, within HP15_p187g66at 59.560 kb on - strand, within HP15_p187g66at 59.562 kb on - strand, within HP15_p187g66at 59.596 kb on + strand, within HP15_p187g66at 59.601 kb on + strand, within HP15_p187g66at 59.604 kb on - strand, within HP15_p187g66at 59.604 kb on - strand, within HP15_p187g66at 59.604 kb on - strand, within HP15_p187g66at 59.609 kb on - strand, within HP15_p187g66at 59.615 kb on - strand, within HP15_p187g66at 59.629 kb on + strand, within HP15_p187g66at 59.629 kb on + strand, within HP15_p187g66at 59.629 kb on + strand, within HP15_p187g66at 59.629 kb on + strand, within HP15_p187g66at 59.629 kb on + strand, within HP15_p187g66at 59.629 kb on + strand, within HP15_p187g66at 59.629 kb on + strand, within HP15_p187g66at 59.637 kb on - strand, within HP15_p187g66at 59.637 kb on - strand, within HP15_p187g66at 59.637 kb on - strand, within HP15_p187g66at 59.637 kb on - strand, within HP15_p187g66at 59.637 kb on - strand, within HP15_p187g66at 59.694 kb on + strandat 59.726 kb on + strandat 59.733 kb on + strandat 59.734 kb on - strandat 59.741 kb on - strandat 59.743 kb on + strandat 59.766 kb on + strandat 59.768 kb on - strandat 59.790 kb on + strandat 59.841 kb on + strandat 59.874 kb on + strandat 59.925 kb on + strand, within HP15_p187g67at 59.928 kb on - strand, within HP15_p187g67at 59.955 kb on - strand, within HP15_p187g67at 60.006 kb on + strand, within HP15_p187g67at 60.015 kb on - strand, within HP15_p187g67at 60.020 kb on - strand, within HP15_p187g67at 60.027 kb on + strand, within HP15_p187g67at 60.105 kb on + strand, within HP15_p187g67at 60.105 kb on + strand, within HP15_p187g67at 60.113 kb on - strand, within HP15_p187g67at 60.113 kb on - strand, within HP15_p187g67at 60.153 kb on + strand, within HP15_p187g67at 60.161 kb on - strand, within HP15_p187g67at 60.161 kb on - strand, within HP15_p187g67at 60.207 kb on + strand, within HP15_p187g67at 60.207 kb on + strand, within HP15_p187g67at 60.262 kb on + strand, within HP15_p187g67at 60.262 kb on + strand, within HP15_p187g67at 60.269 kb on - strand, within HP15_p187g67at 60.293 kb on - strand, within HP15_p187g67at 60.302 kb on + strand, within HP15_p187g67at 60.302 kb on + strand, within HP15_p187g67at 60.302 kb on + strand, within HP15_p187g67at 60.310 kb on - strand, within HP15_p187g67at 60.311 kb on - strand, within HP15_p187g67at 60.333 kb on + strand, within HP15_p187g67at 60.341 kb on - strand, within HP15_p187g67at 60.341 kb on - strand, within HP15_p187g67at 60.369 kb on + strand, within HP15_p187g67at 60.401 kb on + strand, within HP15_p187g67at 60.424 kb on - strand, within HP15_p187g67at 60.425 kb on + strand, within HP15_p187g67at 60.425 kb on - strand, within HP15_p187g67at 60.449 kb on + strand, within HP15_p187g67at 60.457 kb on - strand, within HP15_p187g67at 60.457 kb on - strand, within HP15_p187g67at 60.457 kb on - strand, within HP15_p187g67at 60.471 kb on - strand, within HP15_p187g67at 60.471 kb on - strand, within HP15_p187g67at 60.492 kb on - strand, within HP15_p187g67at 60.540 kb on - strand, within HP15_p187g67at 60.550 kb on - strand, within HP15_p187g67at 60.566 kb on - strand, within HP15_p187g67at 60.568 kb on + strand, within HP15_p187g67at 60.620 kb on + strand, within HP15_p187g67at 60.635 kb on + strand, within HP15_p187g67at 60.635 kb on + strand, within HP15_p187g67at 60.655 kb on + strand, within HP15_p187g67at 60.685 kb on + strand, within HP15_p187g67at 60.715 kb on - strand, within HP15_p187g67at 60.715 kb on - strand, within HP15_p187g67at 60.723 kb on + strand, within HP15_p187g67at 60.729 kb on - strand, within HP15_p187g67at 60.746 kb on + strand, within HP15_p187g67at 60.780 kb on + strand, within HP15_p187g67at 60.780 kb on + strand, within HP15_p187g67at 60.780 kb on + strand, within HP15_p187g67at 60.780 kb on + strand, within HP15_p187g67at 60.780 kb on + strand, within HP15_p187g67at 60.780 kb on + strand, within HP15_p187g67at 60.788 kb on - strand, within HP15_p187g67at 60.788 kb on - strand, within HP15_p187g67at 60.788 kb on - strand, within HP15_p187g67at 60.806 kb on - strand, within HP15_p187g67at 60.817 kb on + strand, within HP15_p187g67at 60.817 kb on + strand, within HP15_p187g67at 60.817 kb on + strand, within HP15_p187g67at 60.817 kb on + strand, within HP15_p187g67at 60.817 kb on + strand, within HP15_p187g67at 60.824 kb on - strand, within HP15_p187g67at 60.824 kb on - strand, within HP15_p187g67at 60.825 kb on - strand, within HP15_p187g67at 60.866 kb on - strandat 60.887 kb on + strandat 60.907 kb on - strandat 60.998 kb on - strandat 61.014 kb on + strandat 61.033 kb on + strandat 61.048 kb on + strandat 61.072 kb on + strandat 61.097 kb on - strandat 61.120 kb on + strandat 61.120 kb on + strandat 61.120 kb on + strandat 61.128 kb on - strandat 61.128 kb on - strandat 61.128 kb on - strandat 61.145 kb on + strand, within HP15_p187g68at 61.155 kb on + strand, within HP15_p187g68at 61.155 kb on + strand, within HP15_p187g68at 61.155 kb on + strand, within HP15_p187g68at 61.163 kb on - strand, within HP15_p187g68at 61.163 kb on - strand, within HP15_p187g68at 61.163 kb on - strand, within HP15_p187g68at 61.163 kb on - strand, within HP15_p187g68at 61.163 kb on - strand, within HP15_p187g68at 61.168 kb on + strand, within HP15_p187g68at 61.184 kb on - strand, within HP15_p187g68at 61.269 kb on - strand, within HP15_p187g68at 61.325 kb on - strand, within HP15_p187g68at 61.335 kb on - strand, within HP15_p187g68at 61.358 kb on - strand, within HP15_p187g68at 61.363 kb on - strand, within HP15_p187g68at 61.402 kb on - strand, within HP15_p187g68at 61.429 kb on + strand, within HP15_p187g68at 61.429 kb on + strand, within HP15_p187g68at 61.429 kb on + strand, within HP15_p187g68at 61.429 kb on - strand, within HP15_p187g68at 61.437 kb on - strand, within HP15_p187g68at 61.439 kb on + strand, within HP15_p187g68at 61.441 kb on + strand, within HP15_p187g68at 61.441 kb on + strand, within HP15_p187g68at 61.447 kb on - strand, within HP15_p187g68at 61.449 kb on - strand, within HP15_p187g68at 61.503 kb on - strand, within HP15_p187g68at 61.545 kb on - strand, within HP15_p187g68at 61.564 kb on - strand, within HP15_p187g68at 61.585 kb on - strand, within HP15_p187g68at 61.617 kb on - strand, within HP15_p187g68at 61.637 kb on + strand, within HP15_p187g68at 61.689 kb on + strand, within HP15_p187g68at 61.689 kb on + strand, within HP15_p187g68at 61.757 kb on - strand, within HP15_p187g68at 61.792 kb on - strand, within HP15_p187g68at 61.808 kb on + strand, within HP15_p187g68at 61.828 kb on + strand, within HP15_p187g68at 61.858 kb on + strand, within HP15_p187g68at 61.881 kb on + strand, within HP15_p187g68at 61.906 kb on + strand, within HP15_p187g68

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Histidine
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58,813 + -1.0
58,853 + +2.0
58,888 - HP15_p187g66 0.13 +0.4
58,924 + HP15_p187g66 0.16 +0.4
58,945 + HP15_p187g66 0.18 +0.3
58,960 - HP15_p187g66 0.20 -0.6
58,961 + HP15_p187g66 0.20 -0.5
58,961 + HP15_p187g66 0.20 -1.1
58,969 - HP15_p187g66 0.21 +0.1
58,980 + HP15_p187g66 0.22 -1.5
58,983 + HP15_p187g66 0.22 +0.7
58,986 + HP15_p187g66 0.22 -1.7
58,986 + HP15_p187g66 0.22 -1.4
58,993 - HP15_p187g66 0.23 +0.5
59,021 + HP15_p187g66 0.26 -1.0
59,036 - HP15_p187g66 0.27 +0.1
59,038 + HP15_p187g66 0.27 -0.2
59,038 + HP15_p187g66 0.27 +0.2
59,046 - HP15_p187g66 0.28 -0.6
59,046 - HP15_p187g66 0.28 +0.5
59,051 - HP15_p187g66 0.29 +0.3
59,063 - HP15_p187g66 0.30 +0.5
59,073 - HP15_p187g66 0.31 -0.8
59,073 - HP15_p187g66 0.31 +0.2
59,087 + HP15_p187g66 0.32 +0.4
59,129 - HP15_p187g66 0.36 +1.0
59,172 + HP15_p187g66 0.40 -0.9
59,181 - HP15_p187g66 0.41 -0.3
59,188 + HP15_p187g66 0.42 -0.4
59,190 + HP15_p187g66 0.42 -0.8
59,195 + HP15_p187g66 0.43 +0.4
59,195 + HP15_p187g66 0.43 -0.3
59,212 + HP15_p187g66 0.44 +1.1
59,212 + HP15_p187g66 0.44 -1.3
59,310 - HP15_p187g66 0.54 +0.2
59,338 - HP15_p187g66 0.56 -0.1
59,395 - HP15_p187g66 0.62 +0.7
59,414 + HP15_p187g66 0.64 +0.2
59,414 + HP15_p187g66 0.64 -0.1
59,422 - HP15_p187g66 0.65 +2.2
59,429 - HP15_p187g66 0.65 +0.1
59,437 - HP15_p187g66 0.66 +0.1
59,506 - HP15_p187g66 0.73 +0.9
59,538 + HP15_p187g66 0.76 +1.2
59,553 - HP15_p187g66 0.77 +0.8
59,560 - HP15_p187g66 0.78 -0.6
59,562 - HP15_p187g66 0.78 -1.4
59,596 + HP15_p187g66 0.81 +0.7
59,601 + HP15_p187g66 0.82 +0.7
59,604 - HP15_p187g66 0.82 +0.3
59,604 - HP15_p187g66 0.82 -0.8
59,604 - HP15_p187g66 0.82 +0.3
59,609 - HP15_p187g66 0.83 +0.1
59,615 - HP15_p187g66 0.83 -1.3
59,629 + HP15_p187g66 0.85 +0.4
59,629 + HP15_p187g66 0.85 +0.2
59,629 + HP15_p187g66 0.85 -0.5
59,629 + HP15_p187g66 0.85 -0.6
59,629 + HP15_p187g66 0.85 -0.5
59,629 + HP15_p187g66 0.85 +0.1
59,629 + HP15_p187g66 0.85 +1.7
59,637 - HP15_p187g66 0.85 -0.4
59,637 - HP15_p187g66 0.85 +1.2
59,637 - HP15_p187g66 0.85 +1.5
59,637 - HP15_p187g66 0.85 -1.2
59,637 - HP15_p187g66 0.85 +1.2
59,694 + +1.2
59,726 + -0.8
59,733 + -1.0
59,734 - +1.7
59,741 - -0.2
59,743 + +0.4
59,766 + -1.2
59,768 - -0.2
59,790 + -0.6
59,841 + -0.1
59,874 + +0.5
59,925 + HP15_p187g67 0.13 -0.7
59,928 - HP15_p187g67 0.13 -1.3
59,955 - HP15_p187g67 0.16 +0.1
60,006 + HP15_p187g67 0.20 +0.4
60,015 - HP15_p187g67 0.21 +0.6
60,020 - HP15_p187g67 0.21 +0.7
60,027 + HP15_p187g67 0.22 +0.2
60,105 + HP15_p187g67 0.28 -0.0
60,105 + HP15_p187g67 0.28 -0.5
60,113 - HP15_p187g67 0.29 +1.8
60,113 - HP15_p187g67 0.29 -0.2
60,153 + HP15_p187g67 0.32 -0.3
60,161 - HP15_p187g67 0.33 +3.2
60,161 - HP15_p187g67 0.33 -1.4
60,207 + HP15_p187g67 0.37 -0.3
60,207 + HP15_p187g67 0.37 -0.1
60,262 + HP15_p187g67 0.42 +0.4
60,262 + HP15_p187g67 0.42 +0.2
60,269 - HP15_p187g67 0.42 -0.0
60,293 - HP15_p187g67 0.44 -0.6
60,302 + HP15_p187g67 0.45 +0.1
60,302 + HP15_p187g67 0.45 +0.5
60,302 + HP15_p187g67 0.45 +0.2
60,310 - HP15_p187g67 0.46 +0.3
60,311 - HP15_p187g67 0.46 -1.1
60,333 + HP15_p187g67 0.48 -0.5
60,341 - HP15_p187g67 0.48 -0.3
60,341 - HP15_p187g67 0.48 +1.9
60,369 + HP15_p187g67 0.51 -0.1
60,401 + HP15_p187g67 0.53 -0.5
60,424 - HP15_p187g67 0.55 +0.4
60,425 + HP15_p187g67 0.55 -0.4
60,425 - HP15_p187g67 0.55 -0.2
60,449 + HP15_p187g67 0.58 -0.2
60,457 - HP15_p187g67 0.58 -0.3
60,457 - HP15_p187g67 0.58 +0.3
60,457 - HP15_p187g67 0.58 -0.1
60,471 - HP15_p187g67 0.59 +0.4
60,471 - HP15_p187g67 0.59 +0.2
60,492 - HP15_p187g67 0.61 -0.7
60,540 - HP15_p187g67 0.65 -2.0
60,550 - HP15_p187g67 0.66 +0.4
60,566 - HP15_p187g67 0.67 -0.4
60,568 + HP15_p187g67 0.68 -0.1
60,620 + HP15_p187g67 0.72 -0.2
60,635 + HP15_p187g67 0.73 -0.3
60,635 + HP15_p187g67 0.73 -1.2
60,655 + HP15_p187g67 0.75 -0.6
60,685 + HP15_p187g67 0.77 +0.5
60,715 - HP15_p187g67 0.80 +0.1
60,715 - HP15_p187g67 0.80 -0.7
60,723 + HP15_p187g67 0.81 -0.0
60,729 - HP15_p187g67 0.81 -0.2
60,746 + HP15_p187g67 0.83 -0.4
60,780 + HP15_p187g67 0.86 -0.5
60,780 + HP15_p187g67 0.86 -1.2
60,780 + HP15_p187g67 0.86 +0.1
60,780 + HP15_p187g67 0.86 -0.3
60,780 + HP15_p187g67 0.86 +0.5
60,780 + HP15_p187g67 0.86 -1.7
60,788 - HP15_p187g67 0.86 -1.2
60,788 - HP15_p187g67 0.86 -1.5
60,788 - HP15_p187g67 0.86 +0.4
60,806 - HP15_p187g67 0.88 +0.3
60,817 + HP15_p187g67 0.89 -0.6
60,817 + HP15_p187g67 0.89 -1.7
60,817 + HP15_p187g67 0.89 -0.4
60,817 + HP15_p187g67 0.89 +2.1
60,817 + HP15_p187g67 0.89 +0.6
60,824 - HP15_p187g67 0.89 +1.1
60,824 - HP15_p187g67 0.89 -0.8
60,825 - HP15_p187g67 0.89 +0.7
60,866 - +0.8
60,887 + -0.6
60,907 - +1.4
60,998 - -0.3
61,014 + +0.2
61,033 + +0.7
61,048 + +0.1
61,072 + +0.5
61,097 - +1.5
61,120 + -1.1
61,120 + -0.1
61,120 + -0.8
61,128 - -0.6
61,128 - -0.8
61,128 - +1.2
61,145 + HP15_p187g68 0.11 +0.0
61,155 + HP15_p187g68 0.12 -0.9
61,155 + HP15_p187g68 0.12 -0.1
61,155 + HP15_p187g68 0.12 +0.4
61,163 - HP15_p187g68 0.12 +0.1
61,163 - HP15_p187g68 0.12 +1.0
61,163 - HP15_p187g68 0.12 -1.3
61,163 - HP15_p187g68 0.12 -0.2
61,163 - HP15_p187g68 0.12 -0.4
61,168 + HP15_p187g68 0.13 +0.0
61,184 - HP15_p187g68 0.14 -1.0
61,269 - HP15_p187g68 0.21 -1.2
61,325 - HP15_p187g68 0.25 -0.2
61,335 - HP15_p187g68 0.26 -0.2
61,358 - HP15_p187g68 0.28 +0.5
61,363 - HP15_p187g68 0.28 -0.1
61,402 - HP15_p187g68 0.31 -0.1
61,429 + HP15_p187g68 0.33 -1.7
61,429 + HP15_p187g68 0.33 -2.7
61,429 + HP15_p187g68 0.33 -0.8
61,429 - HP15_p187g68 0.33 -0.3
61,437 - HP15_p187g68 0.34 -0.0
61,439 + HP15_p187g68 0.34 -0.2
61,441 + HP15_p187g68 0.34 -0.1
61,441 + HP15_p187g68 0.34 +0.0
61,447 - HP15_p187g68 0.35 -0.7
61,449 - HP15_p187g68 0.35 -0.1
61,503 - HP15_p187g68 0.39 +0.6
61,545 - HP15_p187g68 0.43 -0.0
61,564 - HP15_p187g68 0.44 +1.0
61,585 - HP15_p187g68 0.46 -0.8
61,617 - HP15_p187g68 0.48 -0.3
61,637 + HP15_p187g68 0.50 -1.1
61,689 + HP15_p187g68 0.54 +1.7
61,689 + HP15_p187g68 0.54 -0.8
61,757 - HP15_p187g68 0.59 -0.3
61,792 - HP15_p187g68 0.62 -0.6
61,808 + HP15_p187g68 0.63 -0.3
61,828 + HP15_p187g68 0.65 -1.3
61,858 + HP15_p187g68 0.67 +1.2
61,881 + HP15_p187g68 0.69 +0.5
61,906 + HP15_p187g68 0.71 -0.2

Or see this region's nucleotide sequence