Experiment: DinoMM minimal media with L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3059 and HP15_3060 are separated by 238 nucleotides HP15_3060 and HP15_3061 are separated by 74 nucleotides HP15_3061 and HP15_3062 are separated by 86 nucleotides
HP15_3059: HP15_3059 - high-affinity branched-chain amino acid ABC transporter, ATP-binding protein, at 3,210,008 to 3,210,709
_3059
HP15_3060: HP15_3060 - conserved hypothetical protein, secreted, at 3,210,948 to 3,211,412
_3060
HP15_3061: HP15_3061 - conserved hypothetical protein, secreted, at 3,211,487 to 3,213,367
_3061
HP15_3062: HP15_3062 - lipoprotein, at 3,213,454 to 3,214,215
_3062
Position (kb)
3211
3212
3213
3214 Strain fitness (log2 ratio)
-1
0
1
2 at 3210.820 kb on - strand at 3210.824 kb on + strand at 3211.059 kb on - strand, within HP15_3060 at 3211.165 kb on - strand, within HP15_3060 at 3211.165 kb on - strand, within HP15_3060 at 3211.205 kb on - strand, within HP15_3060 at 3211.245 kb on - strand, within HP15_3060 at 3211.245 kb on - strand, within HP15_3060 at 3211.419 kb on - strand at 3211.419 kb on - strand at 3211.483 kb on - strand at 3211.529 kb on + strand at 3211.537 kb on - strand at 3211.542 kb on - strand at 3211.723 kb on + strand, within HP15_3061 at 3211.723 kb on + strand, within HP15_3061 at 3211.730 kb on + strand, within HP15_3061 at 3211.731 kb on - strand, within HP15_3061 at 3211.774 kb on + strand, within HP15_3061 at 3212.051 kb on - strand, within HP15_3061 at 3212.102 kb on - strand, within HP15_3061 at 3212.190 kb on + strand, within HP15_3061 at 3212.425 kb on + strand, within HP15_3061 at 3212.443 kb on - strand, within HP15_3061 at 3212.464 kb on - strand, within HP15_3061 at 3212.596 kb on - strand, within HP15_3061 at 3212.630 kb on + strand, within HP15_3061 at 3212.633 kb on - strand, within HP15_3061 at 3212.671 kb on + strand, within HP15_3061 at 3212.713 kb on - strand, within HP15_3061 at 3212.959 kb on + strand, within HP15_3061 at 3213.024 kb on + strand, within HP15_3061 at 3213.118 kb on + strand, within HP15_3061 at 3213.127 kb on + strand, within HP15_3061 at 3213.140 kb on - strand, within HP15_3061 at 3213.238 kb on + strand at 3213.244 kb on + strand at 3213.506 kb on - strand at 3213.722 kb on - strand, within HP15_3062 at 3213.722 kb on - strand, within HP15_3062 at 3213.832 kb on + strand, within HP15_3062 at 3213.867 kb on + strand, within HP15_3062 at 3213.881 kb on + strand, within HP15_3062 at 3213.881 kb on + strand, within HP15_3062 at 3213.881 kb on + strand, within HP15_3062 at 3213.889 kb on - strand, within HP15_3062 at 3213.889 kb on - strand, within HP15_3062 at 3213.889 kb on - strand, within HP15_3062 at 3213.889 kb on - strand, within HP15_3062 at 3214.033 kb on + strand, within HP15_3062 at 3214.098 kb on + strand, within HP15_3062 at 3214.106 kb on - strand, within HP15_3062 at 3214.178 kb on + strand at 3214.207 kb on + strand at 3214.217 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Histidine remove 3,210,820 - +0.9 3,210,824 + +0.5 3,211,059 - HP15_3060 0.24 -0.4 3,211,165 - HP15_3060 0.47 +0.4 3,211,165 - HP15_3060 0.47 -0.1 3,211,205 - HP15_3060 0.55 +1.4 3,211,245 - HP15_3060 0.64 +0.2 3,211,245 - HP15_3060 0.64 -0.5 3,211,419 - +0.0 3,211,419 - -0.5 3,211,483 - +0.9 3,211,529 + +0.5 3,211,537 - -0.8 3,211,542 - -0.8 3,211,723 + HP15_3061 0.13 +1.3 3,211,723 + HP15_3061 0.13 +1.0 3,211,730 + HP15_3061 0.13 -0.0 3,211,731 - HP15_3061 0.13 +0.8 3,211,774 + HP15_3061 0.15 +0.3 3,212,051 - HP15_3061 0.30 -0.0 3,212,102 - HP15_3061 0.33 -0.0 3,212,190 + HP15_3061 0.37 +1.1 3,212,425 + HP15_3061 0.50 -0.3 3,212,443 - HP15_3061 0.51 -0.1 3,212,464 - HP15_3061 0.52 +0.8 3,212,596 - HP15_3061 0.59 +0.5 3,212,630 + HP15_3061 0.61 -1.4 3,212,633 - HP15_3061 0.61 +0.1 3,212,671 + HP15_3061 0.63 +2.0 3,212,713 - HP15_3061 0.65 +0.3 3,212,959 + HP15_3061 0.78 +0.4 3,213,024 + HP15_3061 0.82 +0.3 3,213,118 + HP15_3061 0.87 +1.8 3,213,127 + HP15_3061 0.87 -0.3 3,213,140 - HP15_3061 0.88 +0.9 3,213,238 + -0.7 3,213,244 + +1.0 3,213,506 - -1.0 3,213,722 - HP15_3062 0.35 +0.5 3,213,722 - HP15_3062 0.35 +0.2 3,213,832 + HP15_3062 0.50 -0.0 3,213,867 + HP15_3062 0.54 -0.7 3,213,881 + HP15_3062 0.56 +0.4 3,213,881 + HP15_3062 0.56 -0.3 3,213,881 + HP15_3062 0.56 -0.0 3,213,889 - HP15_3062 0.57 -0.9 3,213,889 - HP15_3062 0.57 +1.3 3,213,889 - HP15_3062 0.57 -0.5 3,213,889 - HP15_3062 0.57 +0.3 3,214,033 + HP15_3062 0.76 -0.1 3,214,098 + HP15_3062 0.85 -0.1 3,214,106 - HP15_3062 0.86 -0.5 3,214,178 + -0.0 3,214,207 + +0.4 3,214,217 + -1.3
Or see this region's nucleotide sequence