Experiment: DinoMM minimal media with L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2800 and HP15_2801 are separated by 22 nucleotides HP15_2801 and HP15_2802 are separated by 38 nucleotides HP15_2802 and HP15_2803 are separated by 12 nucleotides
HP15_2800: HP15_2800 - glucose-methanol-choline oxidoreductase, at 2,947,377 to 2,948,990
_2800
HP15_2801: HP15_2801 - short-chain dehydrogenase/reductase SDR, at 2,949,013 to 2,949,744
_2801
HP15_2802: HP15_2802 - alpha/beta hydrolase fold protein, at 2,949,783 to 2,950,598
_2802
HP15_2803: HP15_2803 - conserved hypothetical protein, at 2,950,611 to 2,951,651
_2803
Position (kb)
2949
2950 Strain fitness (log2 ratio)
-2
-1
0
1 at 2948.013 kb on - strand, within HP15_2800 at 2948.157 kb on + strand, within HP15_2800 at 2948.157 kb on + strand, within HP15_2800 at 2948.300 kb on - strand, within HP15_2800 at 2948.377 kb on + strand, within HP15_2800 at 2948.388 kb on + strand, within HP15_2800 at 2948.405 kb on - strand, within HP15_2800 at 2948.447 kb on + strand, within HP15_2800 at 2948.447 kb on + strand, within HP15_2800 at 2948.452 kb on + strand, within HP15_2800 at 2948.493 kb on + strand, within HP15_2800 at 2948.508 kb on - strand, within HP15_2800 at 2948.547 kb on - strand, within HP15_2800 at 2948.615 kb on + strand, within HP15_2800 at 2948.621 kb on - strand, within HP15_2800 at 2948.640 kb on - strand, within HP15_2800 at 2948.803 kb on - strand, within HP15_2800 at 2948.812 kb on + strand, within HP15_2800 at 2948.870 kb on + strand at 2948.935 kb on - strand at 2948.952 kb on + strand at 2949.005 kb on - strand at 2949.005 kb on - strand at 2949.104 kb on - strand, within HP15_2801 at 2949.134 kb on + strand, within HP15_2801 at 2949.184 kb on + strand, within HP15_2801 at 2949.237 kb on + strand, within HP15_2801 at 2949.365 kb on - strand, within HP15_2801 at 2949.581 kb on - strand, within HP15_2801 at 2949.723 kb on + strand at 2949.855 kb on + strand at 2949.941 kb on + strand, within HP15_2802 at 2949.995 kb on + strand, within HP15_2802 at 2950.003 kb on - strand, within HP15_2802 at 2950.143 kb on - strand, within HP15_2802 at 2950.216 kb on + strand, within HP15_2802 at 2950.224 kb on - strand, within HP15_2802 at 2950.285 kb on + strand, within HP15_2802 at 2950.399 kb on - strand, within HP15_2802 at 2950.451 kb on + strand, within HP15_2802 at 2950.464 kb on - strand, within HP15_2802 at 2950.605 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Histidine remove 2,948,013 - HP15_2800 0.39 -0.5 2,948,157 + HP15_2800 0.48 -0.6 2,948,157 + HP15_2800 0.48 +0.6 2,948,300 - HP15_2800 0.57 -0.4 2,948,377 + HP15_2800 0.62 -1.5 2,948,388 + HP15_2800 0.63 +0.5 2,948,405 - HP15_2800 0.64 +0.6 2,948,447 + HP15_2800 0.66 +1.6 2,948,447 + HP15_2800 0.66 -0.0 2,948,452 + HP15_2800 0.67 -0.1 2,948,493 + HP15_2800 0.69 -0.6 2,948,508 - HP15_2800 0.70 -0.4 2,948,547 - HP15_2800 0.72 +1.5 2,948,615 + HP15_2800 0.77 +0.6 2,948,621 - HP15_2800 0.77 +0.2 2,948,640 - HP15_2800 0.78 +0.2 2,948,803 - HP15_2800 0.88 +0.3 2,948,812 + HP15_2800 0.89 +0.3 2,948,870 + -0.9 2,948,935 - -0.6 2,948,952 + -0.6 2,949,005 - +0.5 2,949,005 - -1.3 2,949,104 - HP15_2801 0.12 -2.0 2,949,134 + HP15_2801 0.17 +0.1 2,949,184 + HP15_2801 0.23 -0.3 2,949,237 + HP15_2801 0.31 +0.0 2,949,365 - HP15_2801 0.48 -0.7 2,949,581 - HP15_2801 0.78 -1.6 2,949,723 + -0.4 2,949,855 + -0.1 2,949,941 + HP15_2802 0.19 +1.0 2,949,995 + HP15_2802 0.26 +0.8 2,950,003 - HP15_2802 0.27 +0.0 2,950,143 - HP15_2802 0.44 -0.0 2,950,216 + HP15_2802 0.53 +0.2 2,950,224 - HP15_2802 0.54 -0.6 2,950,285 + HP15_2802 0.62 +0.4 2,950,399 - HP15_2802 0.75 -0.0 2,950,451 + HP15_2802 0.82 +0.0 2,950,464 - HP15_2802 0.83 +0.4 2,950,605 - -1.2
Or see this region's nucleotide sequence