Strain Fitness in Marinobacter adhaerens HP15 around HP15_2801

Experiment: DinoMM minimal media with L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2800 and HP15_2801 are separated by 22 nucleotidesHP15_2801 and HP15_2802 are separated by 38 nucleotidesHP15_2802 and HP15_2803 are separated by 12 nucleotides HP15_2800: HP15_2800 - glucose-methanol-choline oxidoreductase, at 2,947,377 to 2,948,990 _2800 HP15_2801: HP15_2801 - short-chain dehydrogenase/reductase SDR, at 2,949,013 to 2,949,744 _2801 HP15_2802: HP15_2802 - alpha/beta hydrolase fold protein, at 2,949,783 to 2,950,598 _2802 HP15_2803: HP15_2803 - conserved hypothetical protein, at 2,950,611 to 2,951,651 _2803 Position (kb) 2949 2950Strain fitness (log2 ratio) -2 -1 0 1at 2948.013 kb on - strand, within HP15_2800at 2948.157 kb on + strand, within HP15_2800at 2948.157 kb on + strand, within HP15_2800at 2948.300 kb on - strand, within HP15_2800at 2948.377 kb on + strand, within HP15_2800at 2948.388 kb on + strand, within HP15_2800at 2948.405 kb on - strand, within HP15_2800at 2948.447 kb on + strand, within HP15_2800at 2948.447 kb on + strand, within HP15_2800at 2948.452 kb on + strand, within HP15_2800at 2948.493 kb on + strand, within HP15_2800at 2948.508 kb on - strand, within HP15_2800at 2948.547 kb on - strand, within HP15_2800at 2948.615 kb on + strand, within HP15_2800at 2948.621 kb on - strand, within HP15_2800at 2948.640 kb on - strand, within HP15_2800at 2948.803 kb on - strand, within HP15_2800at 2948.812 kb on + strand, within HP15_2800at 2948.870 kb on + strandat 2948.935 kb on - strandat 2948.952 kb on + strandat 2949.005 kb on - strandat 2949.005 kb on - strandat 2949.104 kb on - strand, within HP15_2801at 2949.134 kb on + strand, within HP15_2801at 2949.184 kb on + strand, within HP15_2801at 2949.237 kb on + strand, within HP15_2801at 2949.365 kb on - strand, within HP15_2801at 2949.581 kb on - strand, within HP15_2801at 2949.723 kb on + strandat 2949.855 kb on + strandat 2949.941 kb on + strand, within HP15_2802at 2949.995 kb on + strand, within HP15_2802at 2950.003 kb on - strand, within HP15_2802at 2950.143 kb on - strand, within HP15_2802at 2950.216 kb on + strand, within HP15_2802at 2950.224 kb on - strand, within HP15_2802at 2950.285 kb on + strand, within HP15_2802at 2950.399 kb on - strand, within HP15_2802at 2950.451 kb on + strand, within HP15_2802at 2950.464 kb on - strand, within HP15_2802at 2950.605 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Histidine
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2,948,013 - HP15_2800 0.39 -0.5
2,948,157 + HP15_2800 0.48 -0.6
2,948,157 + HP15_2800 0.48 +0.6
2,948,300 - HP15_2800 0.57 -0.4
2,948,377 + HP15_2800 0.62 -1.5
2,948,388 + HP15_2800 0.63 +0.5
2,948,405 - HP15_2800 0.64 +0.6
2,948,447 + HP15_2800 0.66 +1.6
2,948,447 + HP15_2800 0.66 -0.0
2,948,452 + HP15_2800 0.67 -0.1
2,948,493 + HP15_2800 0.69 -0.6
2,948,508 - HP15_2800 0.70 -0.4
2,948,547 - HP15_2800 0.72 +1.5
2,948,615 + HP15_2800 0.77 +0.6
2,948,621 - HP15_2800 0.77 +0.2
2,948,640 - HP15_2800 0.78 +0.2
2,948,803 - HP15_2800 0.88 +0.3
2,948,812 + HP15_2800 0.89 +0.3
2,948,870 + -0.9
2,948,935 - -0.6
2,948,952 + -0.6
2,949,005 - +0.5
2,949,005 - -1.3
2,949,104 - HP15_2801 0.12 -2.0
2,949,134 + HP15_2801 0.17 +0.1
2,949,184 + HP15_2801 0.23 -0.3
2,949,237 + HP15_2801 0.31 +0.0
2,949,365 - HP15_2801 0.48 -0.7
2,949,581 - HP15_2801 0.78 -1.6
2,949,723 + -0.4
2,949,855 + -0.1
2,949,941 + HP15_2802 0.19 +1.0
2,949,995 + HP15_2802 0.26 +0.8
2,950,003 - HP15_2802 0.27 +0.0
2,950,143 - HP15_2802 0.44 -0.0
2,950,216 + HP15_2802 0.53 +0.2
2,950,224 - HP15_2802 0.54 -0.6
2,950,285 + HP15_2802 0.62 +0.4
2,950,399 - HP15_2802 0.75 -0.0
2,950,451 + HP15_2802 0.82 +0.0
2,950,464 - HP15_2802 0.83 +0.4
2,950,605 - -1.2

Or see this region's nucleotide sequence